View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14493_high_36 (Length: 247)

Name: NF14493_high_36
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14493_high_36
NF14493_high_36
[»] chr7 (5 HSPs)
chr7 (1-80)||(28086688-28086767)
chr7 (13-77)||(44257871-44257935)
chr7 (145-207)||(28086551-28086613)
chr7 (147-207)||(28087666-28087727)
chr7 (147-207)||(44255551-44255611)
[»] chr3 (5 HSPs)
chr3 (1-80)||(22341624-22341703)
chr3 (141-216)||(22341764-22341839)
chr3 (141-207)||(22341310-22341377)
chr3 (150-207)||(53195633-53195691)
chr3 (144-206)||(53196925-53196988)
[»] chr1 (6 HSPs)
chr1 (1-79)||(35477743-35477821)
chr1 (147-216)||(33851006-33851077)
chr1 (147-216)||(33942901-33942972)
chr1 (141-210)||(35477605-35477675)
chr1 (36-80)||(33942161-33942205)
chr1 (145-207)||(33942075-33942138)
[»] chr5 (3 HSPs)
chr5 (10-80)||(37253615-37253685)
chr5 (141-207)||(37253479-37253546)
chr5 (147-216)||(37256016-37256086)
[»] chr8 (6 HSPs)
chr8 (17-79)||(39978286-39978348)
chr8 (144-207)||(29636862-29636926)
chr8 (145-207)||(41441257-41441320)
chr8 (148-216)||(41440518-41440588)
chr8 (36-79)||(29636797-29636839)
chr8 (36-80)||(41441190-41441234)
[»] chr4 (6 HSPs)
chr4 (17-79)||(34487076-34487138)
chr4 (17-76)||(38229537-38229596)
chr4 (149-207)||(47489273-47489332)
chr4 (179-215)||(34486929-34486966)
chr4 (149-216)||(47487903-47487971)
chr4 (180-216)||(37273622-37273658)
[»] scaffold0210 (2 HSPs)
scaffold0210 (23-79)||(19232-19288)
scaffold0210 (23-79)||(27124-27180)
[»] chr2 (4 HSPs)
chr2 (149-207)||(45230121-45230180)
chr2 (149-207)||(45231485-45231544)
chr2 (149-207)||(39673794-39673852)
chr2 (179-216)||(20193174-20193211)
[»] chr6 (1 HSPs)
chr6 (150-207)||(655605-655663)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 28086767 - 28086688
Alignment:
1 ggagaatgtaagagaaaatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgaccac 80  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28086767 ggagaacgtaagagaaaatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgaccac 28086688  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 44257871 - 44257935
Alignment:
13 agaaaatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgac 77  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
44257871 agaaaatgaatggaggagggaaaattagctgagagagggagcatgtgaatacttttaatcttgac 44257935  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 28086613 - 28086551
Alignment:
145 tggcctttgaccgggtcaaaattaggggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    ||||||||||||  || |||||||| ||||||| | |||||||||||||||||||||||||||    
28086613 tggcctttgaccaagtgaaaattagaggggcctataagttgcaaaagggggtgaagttagggg 28086551  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 28087666 - 28087727
Alignment:
147 gcctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    ||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||||||    
28087666 gcctttgactgggtcaaaattagagggggcctatgagttgcaaaagtgggcgaagttagggg 28087727  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 44255611 - 44255551
Alignment:
147 gcctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    ||||||||||||||||||||||| ||| || | ||| |||||||||||||| ||||||||||    
44255611 gcctttgaccgggtcaaaattagagggagcatatgaattgcaaaagggggt-aagttagggg 44255551  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 22341624 - 22341703
Alignment:
1 ggagaatgtaagagaaaatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgaccac 80  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22341624 ggagaacgtaagagaaaatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgaccac 22341703  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 22341764 - 22341839
Alignment:
141 caagtggcctttgaccgggtcaaaattaggggggcctgtgagttgcaaaagggggtgaagttaggggctgaaaagt 216  Q
    |||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
22341764 caagtggcctttgaccggatcaaaattaggggggcttatgagttgcaaaagggggtgaagttaggggctgaaaagt 22341839  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 22341377 - 22341310
Alignment:
141 caagtggcctttgaccgggtcaaaatta-ggggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    ||||||||||||||||||||||||||||  |||||| | ||| |||||||| ||||||||||||||||    
22341377 caagtggcctttgaccgggtcaaaattatagggggcttatgaattgcaaaaaggggtgaagttagggg 22341310  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 53195691 - 53195633
Alignment:
150 tttgaccgggtcaaaattagggggg-cctgtgagttgcaaaagggggtgaagttagggg 207  Q
    ||||||||||||||||| || |||| ||| | |||||||||||||||||||||||||||    
53195691 tttgaccgggtcaaaatcagaggggacctataagttgcaaaagggggtgaagttagggg 53195633  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 53196925 - 53196988
Alignment:
144 gtggcctttgaccgggtcaaaattagggg-ggcctgtgagttgcaaaagggggtgaagttaggg 206  Q
    ||||||||||||| ||||||||| || |  ||||| |||||||||||| |||||||||||||||    
53196925 gtggcctttgaccaggtcaaaatcagagacggcctatgagttgcaaaatggggtgaagttaggg 53196988  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35477821 - 35477743
Alignment:
1 ggagaatgtaagagaaaatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgacca 79  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35477821 ggagaacgtaagagaaaatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgacca 35477743  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 33851077 - 33851006
Alignment:
147 gcctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagtta-ggggctgaaaagt 216  Q
    |||||||||  |||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||    
33851077 gcctttgacttggtcaaaattagagggggcctatgagttgcaaaagggggcgaagttagggggctgaaaagt 33851006  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 33942901 - 33942972
Alignment:
147 gcctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagtta-ggggctgaaaagt 216  Q
    |||||||||  |||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||    
33942901 gcctttgacttggtcaaaattagagggggcctatgagttgcaaaagggggcgaagttagggggctgaaaagt 33942972  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 35477675 - 35477605
Alignment:
141 caagtggcctttgaccgggtcaaaattaggg-gggcctgtgagttgcaaaagggggtgaagttaggggctg 210  Q
    |||||||||||||||||| |||||||||  | |||||| || |||||||||||||| ||||||||||||||    
35477675 caagtggcctttgaccggatcaaaattaaagagggcctatgggttgcaaaagggggggaagttaggggctg 35477605  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 33942205 - 33942161
Alignment:
36 attagctaagagagggagcatgtgaatacttttaatcttgaccac 80  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||    
33942205 attagctaagagagggagcatgtgagttattttaatcttgaccac 33942161  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 33942138 - 33942075
Alignment:
145 tggcctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    |||||||||||| | || ||||||| |||||||| ||||||| |||||||| ||||||||||||    
33942138 tggcctttgacccgatcgaaattagagggggcctatgagttgtaaaaggggatgaagttagggg 33942075  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 37253685 - 37253615
Alignment:
10 aagagaaaatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgaccac 80  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
37253685 aagagaaaaagaatggatgggggaaaattagctaagagagggagcatgtgaatacttttaatcttgaccac 37253615  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 37253546 - 37253479
Alignment:
141 caagtggcctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    ||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||    
37253546 caagtggcctttgaccgggtcaaaattagagggggcctataaattgcaaaagggggtgaagttagggg 37253479  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 37256016 - 37256086
Alignment:
147 gcctttgaccgggtcaaaattagggg-ggcctgtgagttgcaaaagggggtgaagttaggggctgaaaagt 216  Q
    |||||||||| ||||||||| || || ||||| | |||||||||||||||| || |||||||||| |||||    
37256016 gcctttgacctggtcaaaatcagaggaggcctataagttgcaaaagggggtaaaattaggggctggaaagt 37256086  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 39978286 - 39978348
Alignment:
17 aatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgacca 79  Q
    |||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||    
39978286 aatgaatggaggaggggaaattagctaagagagggagcatgtgaggacttttaatcttgacca 39978348  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 29636862 - 29636926
Alignment:
144 gtggcctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||||    
29636862 gtggcctttgaccgagtcaaaattagagggggcatgtgagttgcaaaagggggtgaaattagggg 29636926  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 41441257 - 41441320
Alignment:
145 tggcctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    |||||||||||| | |||||||||| |||||||| ||||||| |||||||| ||||||||||||    
41441257 tggcctttgacccgatcaaaattagagggggcctatgagttgtaaaaggggatgaagttagggg 41441320  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 41440588 - 41440518
Alignment:
148 cctttgaccgggtcaaaattagggggg-cctgtgagttgcaaaagggggtgaagtta-ggggctgaaaagt 216  Q
    ||||||||  |||||||||||| || | ||| ||||||||||||||||||||||||| |||||||||||||    
41440588 cctttgacttggtcaaaattagaggagacctatgagttgcaaaagggggtgaagttagggggctgaaaagt 41440518  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 29636797 - 29636839
Alignment:
36 attagctaagagagggagcatgtgaatacttttaatcttgacca 79  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
29636797 attagctaagagagggagcatgtg-attcttttaatcttgacca 29636839  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 41441190 - 41441234
Alignment:
36 attagctaagagagggagcatgtgaatacttttaatcttgaccac 80  Q
    ||||||||||||| ||||||||||| |  ||||||||||||||||    
41441190 attagctaagagaaggagcatgtgagttattttaatcttgaccac 41441234  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 34487138 - 34487076
Alignment:
17 aatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgacca 79  Q
    ||||| ||||||||| ||||||||||| || ||||||||||||| | ||||||||||||||||    
34487138 aatgagtggaggaggaaaaattagctaggacagggagcatgtgagttcttttaatcttgacca 34487076  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 38229596 - 38229537
Alignment:
17 aatgaatggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttga 76  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||| | |||| ||||||||    
38229596 aatgagtggagaagggaaaattagttaagagagggagcatgtgagttctttaaatcttga 38229537  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 47489273 - 47489332
Alignment:
149 ctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    |||||||| ||||||||| || |||||| | || ||||||||||||||||||||||||||    
47489273 ctttgacctggtcaaaatcagagggggcttatgggttgcaaaagggggtgaagttagggg 47489332  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 34486966 - 34486929
Alignment:
179 tgagttgcaaaagggggtgaagtta-ggggctgaaaag 215  Q
    ||||||||||||||||||||||||| ||||||||||||    
34486966 tgagttgcaaaagggggtgaagttagggggctgaaaag 34486929  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 47487971 - 47487903
Alignment:
149 ctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagtta-ggggctgaaaagt 216  Q
    |||||||| ||||||||| || |||||||| |||||||||||| |||||| ||||| |||||||||||||    
47487971 ctttgacccggtcaaaataagagggggcctctgagttgcaaaa-ggggtggagttagggggctgaaaagt 47487903  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 37273658 - 37273622
Alignment:
180 gagttgcaaaagggggtgaagttaggggctgaaaagt 216  Q
    |||||||||||||| |||||||| |||||||||||||    
37273658 gagttgcaaaagggtgtgaagttgggggctgaaaagt 37273622  T

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Target: scaffold0210 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 19288 - 19232
Alignment:
23 tggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgacca 79  Q
    |||||||||| |||||| |||||| ||||||||||||| | ||||||||||||||||    
19288 tggaggagggcaaattacctaagatagggagcatgtgatttcttttaatcttgacca 19232  T

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Target: scaffold0210; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 27180 - 27124
Alignment:
23 tggaggagggaaaattagctaagagagggagcatgtgaatacttttaatcttgacca 79  Q
    |||||||||| |||||| |||||| ||||||||||||| | ||||||||||||||||    
27180 tggaggagggcaaattacctaagatagggagcatgtgatttcttttaatcttgacca 27124  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 45230180 - 45230121
Alignment:
149 ctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    |||||||| ||||||||| || |||||||| |||||||||||||||||||||| ||||||    
45230180 ctttgacccggtcaaaatcagagggggcctctgagttgcaaaagggggtgaaggtagggg 45230121  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 45231485 - 45231544
Alignment:
149 ctttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    |||||||| ||||||||| || |||||||| || ||||||||||||||||||||||||||    
45231485 ctttgacccggtcaaaatcagagggggcctatgggttgcaaaagggggtgaagttagggg 45231544  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 39673852 - 39673794
Alignment:
149 ctttgaccgggtcaaaattaggggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    ||||||||||||||||||||  |||| || |||||||||||||||||  ||||||||||    
39673852 ctttgaccgggtcaaaattaaaggggtctatgagttgcaaaagggggcaaagttagggg 39673794  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 20193174 - 20193211
Alignment:
179 tgagttgcaaaagggggtgaagttaggggctgaaaagt 216  Q
    |||||||||||||||||||||||| ||||||| |||||    
20193174 tgagttgcaaaagggggtgaagttgggggctggaaagt 20193211  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 655663 - 655605
Alignment:
150 tttgaccgggtcaaaattag-gggggcctgtgagttgcaaaagggggtgaagttagggg 207  Q
    |||||||  |||||||| || ||||| || |||||||||||||||||||||||||||||    
655663 tttgaccctgtcaaaatcagagggggtctatgagttgcaaaagggggtgaagttagggg 655605  T

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