View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_high_39 (Length: 238)
Name: NF14493_high_39
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_high_39 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 1033759 - 1033979
Alignment:
| Q |
18 |
ataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1033759 |
ataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatg |
1033858 |
T |
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| Q |
118 |
ccctcagtaagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgag |
217 |
Q |
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| T |
1033859 |
ccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgag |
1033958 |
T |
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| Q |
218 |
aaaggctttcaatggtacttt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
1033959 |
aaaggctttcaatggtacttt |
1033979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 1044146 - 1044360
Alignment:
| Q |
18 |
ataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatg |
117 |
Q |
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||||||||||| | ||||||||||||| ||||||||||||| ||| || ||||| ||||||||||||||| |||||||||||| |||||||||||| |
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| T |
1044146 |
ataggagcagataaagttggaattagactatcaccttttgcagaatatgcagaaagcggagactccaatcccaatgaattgggacttcatatggttaatg |
1044245 |
T |
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| Q |
118 |
ccctcagtaagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgag |
217 |
Q |
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| T |
1044246 |
ccctcaataagtacaatattctttactgtcacatggtggaaccaagaataaaatcagcttctgaaacgattgaaagcccttacagtctggtgccaatgag |
1044345 |
T |
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| Q |
218 |
aaaggctttcaatgg |
232 |
Q |
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||||||||||||||| |
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| T |
1044346 |
aaaggctttcaatgg |
1044360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 1640797 - 1640649
Alignment:
| Q |
18 |
ataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatg |
117 |
Q |
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||||| |||||||||||||||||||||||||| ||||| || ||| || ||||| | ||||||||||||| ||||||||| |||||||||||||||| |
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| T |
1640797 |
ataggtgcagaaagagttggaattagattatcgcctttcgcagaatatggagaatgtggagactccaatcctgaagaattggggctttatatggttaatg |
1640698 |
T |
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| Q |
118 |
ccctcagtaagtacaatattctttactgtcacatggtggaaccaagaat |
166 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1640697 |
ccctcagtaaatacaatattctttactgtcacatggtggaaccaagaat |
1640649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 1071488 - 1071636
Alignment:
| Q |
18 |
ataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatg |
117 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||| || ||||||||| | |||||||||| || | |||||||||||||||||||||||||| |
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| T |
1071488 |
ataggaacagaaagagttggaataagattatcaccttttgcagagtattcagaatgtggagactccaaccctaaagaattgggactttatatggttaatg |
1071587 |
T |
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| Q |
118 |
ccctcagtaagtacaatattctttactgtcacatggtggaaccaagaat |
166 |
Q |
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|||||| ||| ||| ||||||||| ||||||||||||||||||||||| |
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| T |
1071588 |
ccctcaataaatacggtattctttattgtcacatggtggaaccaagaat |
1071636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 1065761 - 1065909
Alignment:
| Q |
18 |
ataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatg |
117 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| || |||||| | |||||||||| |||| |||||||||||||||||||| |||| |
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| T |
1065761 |
ataggagcagaaagagttggaataagattatcaccttttgcggagtatgcagaatgtggagactccaaccccaatgaattgggactttatatggtcaatg |
1065860 |
T |
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| Q |
118 |
ccctcagtaagtacaatattctttactgtcacatggtggaaccaagaat |
166 |
Q |
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|||||| ||| || ||||||||||||||| ||||||||||||||||| |
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| T |
1065861 |
ccctcaataaatatggtattctttactgtcatatggtggaaccaagaat |
1065909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 1058669 - 1058889
Alignment:
| Q |
18 |
ataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatg |
117 |
Q |
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||||| ||||| ||| |||||||||||||||||||||| | ||| || |||||| | |||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
1058669 |
ataggtgcagatagaactggaattagattatcacctttttcagaatatgcagaatgtgtagactctaatcccagagaattgggactttatatggctaatg |
1058768 |
T |
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| Q |
118 |
ccctcagtaagtacaatattctttactgtcacatggtggaaccaagaataaaatcaaatgatgaaacgattgaaagcccttacagtctggtgcccatgag |
217 |
Q |
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|||||| ||| || ||||||||||||||| |||||||||||||||| ||| | | |||||| |||||| || || |||| || ||||| ||||| |
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| T |
1058769 |
ccctcaataaatatggtattctttactgtcatgtggtggaaccaagaatgaaaactgttaatgaaagaattgaatgctctcacagccttgtgccgatgag |
1058868 |
T |
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| Q |
218 |
aaaggctttcaatggtacttt |
238 |
Q |
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|||||| ||||| || ||||| |
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| T |
1058869 |
aaaggccttcaaaggcacttt |
1058889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 1053404 - 1053552
Alignment:
| Q |
18 |
ataggagcagaaagagttggaattagattatcaccttttgcggaacattcagaatctagagactccaatcccacagaattgggactttatatggttaatg |
117 |
Q |
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||||| ||||||||||||||||| | |||||||||||||| || | ||| | | ||||||| |||||| ||||||||||||||||||||| |||| |
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| T |
1053404 |
ataggtgcagaaagagttggaataaaattatcaccttttgaaaaatttggagattgtggagactcaaatccccaagaattgggactttatatggtgaatg |
1053503 |
T |
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| Q |
118 |
ccctcagtaagtacaatattctttactgtcacatggtggaaccaagaat |
166 |
Q |
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|||||| ||| || ||||||||| ||||| ||||||||||||||||| |
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| T |
1053504 |
ccctcaataaatatggtattctttattgtcatatggtggaaccaagaat |
1053552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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