View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14493_high_46 (Length: 207)
Name: NF14493_high_46
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_high_46 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 28238696 - 28238884
Alignment:
| Q |
19 |
gagtctacccaagacattcacacttgggctatcctcatcaaatgtcattctgtcgatggtaacatgtcttcagctatctctcttttccataagatcatcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28238696 |
gagtctacccaagacattcacacttgggctatcctcatcaaatgtcattctgtcgatggtaacatgtcttcagctatctctcttttccataagatcatcg |
28238795 |
T |
|
| Q |
119 |
acaccggtcatcatcctactgctggtactttgtattttcttttatatggtttttgtgatagacatcagattcacaaagcaatgctcttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
28238796 |
acaccggtcatcatcctactgctggtactttgtattctcttttatatggtttttgtgatagacatcagattcacaaggcaatgcacttt |
28238884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 47568782 - 47568890
Alignment:
| Q |
30 |
agacattcacacttgggctatcctcatcaaatgtcattctgtcgatggtaacatgtcttcagctatctctcttttccataagatcatcgacaccggtcat |
129 |
Q |
| |
|
||||| ||| |||||||||||||||||| | ||||| ||| | ||||| |||||||||| ||||||| | |||||||| ||||||||||||||| || |
|
|
| T |
47568782 |
agacagtcatacttgggctatcctcatccagtgtcactctagacaaggtaaaatgtcttcagatatctctttattccataaaatcatcgacaccggtgat |
47568881 |
T |
|
| Q |
130 |
catcctact |
138 |
Q |
| |
|
|||||||| |
|
|
| T |
47568882 |
aatcctact |
47568890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 28325923 - 28326103
Alignment:
| Q |
30 |
agacattcacacttgggctatcctcatcaaatgtcattctgtcgatggtaacatgtcttcagctatctctcttttccataagatcatcgacaccggtcat |
129 |
Q |
| |
|
||||||||| |||||| | |||||||||||| ||| || ||||||||||||||| ||| || || ||| | |||||||| ||||| ||| |||||| |
|
|
| T |
28325923 |
agacattcatacttggacaatcctcatcaaagctcacgctttcgatggtaacatgttttccgccatgtctttcttccataaaatcataaacaacggtcac |
28326022 |
T |
|
| Q |
130 |
catcctactgct---ggtactttgtattttcttttatatggtttttgtgatagacatcagattcacaaagcaatgctcttt |
207 |
Q |
| |
|
| |||||||||| | |||||| || ||||| | |||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
28326023 |
cgtcctactgctgaggaaactttgaatattcttctccatggtttttgtgtccgccaccagattcacaaagcaatgctcttt |
28326103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 23786715 - 23786781
Alignment:
| Q |
76 |
ggtaacatgtcttcagctatctctcttttccataagatcatcgacaccggtcatcatcctactgctg |
142 |
Q |
| |
|
|||||||||||||||||| ||| | | ||| |||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
23786715 |
ggtaacatgtcttcagctctctatttattcaataaaatcatcgactccggtcattatcctactgctg |
23786781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 28231180 - 28231233
Alignment:
| Q |
85 |
tcttcagctatctctcttttccataagatcatcgacaccggtcatcatcctact |
138 |
Q |
| |
|
||||||||| ||||||| ||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
28231180 |
tcttcagctttctctctattcaataaaatcatcgacaccggttatcatcctact |
28231233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 6327212 - 6327145
Alignment:
| Q |
30 |
agacattcacacttgggctatcctcatcaaatgtcattctgtcgatggtaacatgtcttcagctatct |
97 |
Q |
| |
|
||||||||| |||||| | |||||||||| |||||| | | || |||||||||||||||| ||||||| |
|
|
| T |
6327212 |
agacattcatacttggtcaatcctcatcacatgtcactgtttccatggtaacatgtcttcggctatct |
6327145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 21159565 - 21159467
Alignment:
| Q |
76 |
ggtaacatgtcttcagctatctctcttttccataagatcatcgacaccggtcatcatcctactgctggtactttgtattttcttttatatggtttttgt |
174 |
Q |
| |
|
|||||||||||||| || |||||||| ||| ||| |||||| |||||||| ||||||||| | ||| |||||| || ||||| | ||||||||||| |
|
|
| T |
21159565 |
ggtaacatgtcttctgccatctctctattctgtaatatcatcaacaccggtaatcatcctagtactgaaactttgaatcttcttctcgatggtttttgt |
21159467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University