View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_high_5 (Length: 596)
Name: NF14493_high_5
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 14435338 - 14435046
Alignment:
| Q |
13 |
atgatttcccccaacattatcaccactaaaaatatttcatattccaactcatcatcctaaaccaaattcaccaccaaattatggcagatagcccaagcaa |
112 |
Q |
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| T |
14435338 |
atgatttcccccaacattatcaccactaaaaatatttcatattccaactcatcatcctaaacaaaattaatcaccaaattatggcagatagcccaagcaa |
14435239 |
T |
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| Q |
113 |
gagcaaaagtaactccctcatccatcattccacaaccaaaaagggtggttggaatgctgccatcttcatcatatgtaagttcaacttcaattcaaccctt |
212 |
Q |
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| T |
14435238 |
gagcaaaagtaactccctcatccatcactccacaaccaaaaagggtggttggaatgctgccatcttcatcatatgtaagttcaacttcaattcaaccctt |
14435139 |
T |
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| Q |
213 |
ttcattatataattgatcatgcttcatcatatagttcaaatttcaattcaaccacctcaattattattctttcttccaaatctccaacaccca |
305 |
Q |
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| T |
14435138 |
ttcattatataattgatcatgcttcatcatatagttcaaatttcaattcaaccccctcaattattattctttcttccaaatctccaacaccca |
14435046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 358 - 582
Target Start/End: Complemental strand, 14435006 - 14434782
Alignment:
| Q |
358 |
gttgtggaatttgctgagagatttgcataccaaggtttggcatcaaatctcataaactacctcacaaaatttctgaatgaaccaacaaccacagcagtga |
457 |
Q |
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| T |
14435006 |
gttgtggaatttgctgagagatttgcataccaaggtttggcatcaaatctcataaactacctcacaaaatttctgaatgaaccaacaaccacagcagtga |
14434907 |
T |
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| Q |
458 |
aaaacgtgaacacatgggttggtgtctcctcactattccctttgcttggtggcttcatagctgattcttatcttggtcgattcaacaccatactcttgtc |
557 |
Q |
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| T |
14434906 |
aaaacgtgaacacatgggttggtgtctcctcactattccctttgcttggtggcttcatagctgattcttatcttggtcgattcaacaccatactcttgtc |
14434807 |
T |
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| Q |
558 |
ttcactcatttatcttgtggtaaat |
582 |
Q |
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| T |
14434806 |
ttcactcatttatcttgtggtaaat |
14434782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 542
Target Start/End: Original strand, 4278696 - 4278745
Alignment:
| Q |
493 |
ttccctttgcttggtggcttcatagctgattcttatcttggtcgattcaa |
542 |
Q |
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| T |
4278696 |
ttccctttgcttggtggtttcattgctgactcatatcttggtcgattcaa |
4278745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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