View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_high_6 (Length: 558)
Name: NF14493_high_6
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 90 - 547
Target Start/End: Original strand, 7722749 - 7723194
Alignment:
| Q |
90 |
cctctctttctctttctttatctttatgatctttctactagtataaattgaaactatgcattatgcaagaagaaatcaaaatcatacatgaagggtgtca |
189 |
Q |
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| T |
7722749 |
cctctctttctctttctttatctttatgatctttctactagtataaattgaaactatgcattattcaagaagaaatcaaaatgatacatgaagggtgtca |
7722848 |
T |
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| Q |
190 |
taaacagtagtaattctgcagagatataatagaaactcaaacacttgcttacattacacactcactccctgacttacccttcatttcatttattgcattg |
289 |
Q |
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| T |
7722849 |
taaacagtagtaattctgcagagatataatagaaactcaaacacttgcttacattacacactcactccctgacttacccttcatttcatttattgcattg |
7722948 |
T |
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| Q |
290 |
ggtccnnnnnnnnnnnntatgctctataattttatctcctttactatatatattttgtatttgtatgtacatgtctccatttgcaattcacgacaacgtg |
389 |
Q |
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| T |
7722949 |
ggtcc--ctctctctcttatgctttataattttatctcctttactatatatattttgtatttgtatgtacatgtctccatttgcaattcacgacaacgtg |
7723046 |
T |
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| Q |
390 |
gactgcaggtgctgactagtatttcgacattttattatcttcaaacactacaagacaacaattcactcttctctactctactctactctnnnnnnnccct |
489 |
Q |
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| T |
7723047 |
gactgcaggtgctgactagtatttcgacattttattatcttcaaacactacaagacaacaattcactcttctctactctaaaaaac----------ccct |
7723136 |
T |
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| Q |
490 |
tcaaatcattcattttccattactctttttcacaaagaatgatgcatcgttcatctca |
547 |
Q |
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| T |
7723137 |
tcaaatcattcattttccattactctttttcacaaagaatgatgcatcgttcatctca |
7723194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 7722672 - 7722723
Alignment:
| Q |
18 |
ccttgaagaccgttccctctagtcacgtgggctcttttgaccaacccatcat |
69 |
Q |
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| T |
7722672 |
ccttgaagaccgttccctctagtcacgtgggctcttttgaccaacccatcat |
7722723 |
T |
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