View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_high_7 (Length: 531)
Name: NF14493_high_7
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 33650466 - 33650978
Alignment:
| Q |
1 |
ctgctttgcatcctactaattcagttttggccttgccttgccatttttcttttgtttgttgaatagtgttcatgatttcaagttaggaagttgcaatgcc |
100 |
Q |
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| T |
33650466 |
ctgctttgcatcctactaattcagttttggccttgccttgccatttttcttttgtttgttgaatagtgttcatgatttcaagttaggaagttgcaatgcc |
33650565 |
T |
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| Q |
101 |
acacaaacacaagttaggatgatttatatatcttatgagcctagaccttaatttatgaatttcatgtgtatatttgtgtgatgtagaacctatgcatgat |
200 |
Q |
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| T |
33650566 |
tcacaaacacaagttaggatgatttatatatcttatgagcctagaccttaatttatgaatttcatgtgtatatttgtgtgatgtagaacctatgcatgat |
33650665 |
T |
|
| Q |
201 |
tataatatgatcattgattaaaatgtgcttctacttattttactaggaaagaaaaaggtattgcccaattattgaacttcagttggcagcacacgctact |
300 |
Q |
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| T |
33650666 |
tataatatgatcattgattaaaacgtgcttctacttattttactaggaaagaaaaaggtattgcccaattattgaacttcagttggcagcacacgctact |
33650765 |
T |
|
| Q |
301 |
ttttgttgtggaatcaacaaagttagattttttcttataaaatatttatctgagaaaggacaacgagtttttagtgtgactaatactttgtccaaacatt |
400 |
Q |
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| T |
33650766 |
ttttgttgtggaatcaacaaagttagatttttctttataaaatatttatgtgagaaaggacaacgagtttttagtgtgactaatactttgtccaaacatt |
33650865 |
T |
|
| Q |
401 |
agttttgtagtcggtccaacctttattgaatatatatcgattctcgagttccacgtgattcaaaggtcctattaccttgttaaaaaatgcgctagtagtt |
500 |
Q |
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| T |
33650866 |
agttttgtagtcggtccaacctttattga--atatatcgattctcgagttccacgtgattcaaaggtcctattaccttcttacaaaatgcgctagtagtt |
33650963 |
T |
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| Q |
501 |
tttccttcagaatac |
515 |
Q |
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| T |
33650964 |
tttccttcagaatac |
33650978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 33635320 - 33635452
Alignment:
| Q |
3 |
gctttgcatcctactaattcagttttggccttgccttgccatttttcttttgtttgttgaatagtgttcatgatttcaagttaggaagttgcaatgccac |
102 |
Q |
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|||||||||||||| | ||| |||||||| ||||| | |||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||| |
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| T |
33635320 |
gctttgcatcctaccacttctgttttggctttgcccttccatttttcttttgtttgttgaatagggtccatgatttcaag-taggaagctgcaatgccac |
33635418 |
T |
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| Q |
103 |
acaaacacaagttaggatgatttatatatcttat |
136 |
Q |
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| T |
33635419 |
acaaacacaagttagaatgaggtgtatatcttat |
33635452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 33635675 - 33635748
Alignment:
| Q |
174 |
ttgtgtgatgtagaacctatgcatgattataatatgatc--attgattaaaatgtgcttctacttattttacta |
245 |
Q |
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||||||| ||||||||||||||||| |||||| |||||| ||||||||||| ||||||||| ||||||||||| |
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| T |
33635675 |
ttgtgtggtgtagaacctatgcatggttataacatgatcatattgattaaaacgtgcttctatttattttacta |
33635748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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