View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_high_9 (Length: 522)
Name: NF14493_high_9
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 6833083 - 6832663
Alignment:
| Q |
1 |
tactcaacaaaagtatcaacatcttcaacttcctgagtgttgatgccactagctgcaagatcaagtgctgtgaccttgtgaccagatgattctaaacgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6833083 |
tactcaacaaaagtatcaacatcttcaacttcctcagtgttgatgccactagctgcaagatcaagtgctgtgaccttgtgaccagatgattctaaacgtg |
6832984 |
T |
|
| Q |
101 |
gcttaagcttgtaccaattccaggcacccatgccagaaccatgtaccagaacaaaatgcatttgtttttggtccatatttgcttttgacatgttggtatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6832983 |
gcttaagcttgtaccaattccaggcacccatgccagaaccatgtaccagaacaaaatgcatttgtttttggtccatatttgcttttgacatgttggtatg |
6832884 |
T |
|
| Q |
201 |
tctttgttgtttatatagcatatttagttttgcttgtagcatgctccttttctattaattaaggtttatggtgtatataatcaaggaaaacgtctaaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6832883 |
tctttgttgtttatatagcatatttagttttgcttgtagcatgctccttttcta----ttaaggtttatggtgtatataatcaaggaaaacgtctaaatt |
6832788 |
T |
|
| Q |
301 |
gtaaattagtctattaaatcaaaattgttttgtgtgacgggtttgttttaacgaaaggtatattgctagaaaataacttttacta------ttccaatct |
394 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
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| T |
6832787 |
gtaaattagtctattaaatgaaaattgttttgtgtgacggttttgttttaacgaaaggtagattgctagaaaatcacttttactaccagtgttccaatct |
6832688 |
T |
|
| Q |
395 |
attatcgcttgccttccattccttt |
419 |
Q |
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| T |
6832687 |
attatcgcttgccttccattccttt |
6832663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 406 - 507
Target Start/End: Complemental strand, 6832634 - 6832537
Alignment:
| Q |
406 |
ccttccattcctttataacgtggttgatttcacaagttatttaaaagttggtttcacaaccttcctctcttaccgnnnnnnnaagtattgatagttgtat |
505 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6832634 |
ccttccattcctttatattgtggttgatttcacaagttatttaaaa----gtttcacaaccttcctctcttaccgtttttttaagtattgatagttgtat |
6832539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 6842314 - 6842143
Alignment:
| Q |
1 |
tactcaacaaaagtatcaacatcttcaacttcctgagtgttgatgccactagctgcaagatcaagtgctgtgaccttgtgaccagatgattctaaacgtg |
100 |
Q |
| |
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|||||| ||||||||| ||||||||||| || || ||||||||||||| ||||||||| |||| || |||||| |||||||| |||||||| ||| |
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| T |
6842314 |
tactcagcaaaagtatgaacatcttcaattttgtgtgtgttgatgccacaagctgcaaggtcaaatgttgtgactttgtgacctacagattctaactgtg |
6842215 |
T |
|
| Q |
101 |
gcttaagcttgtaccaattccaggcacccatgccagaaccatgtaccagaacaaaatgcatttgtttttggt |
172 |
Q |
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| T |
6842214 |
gtttaagcttgtaccaactccaagctccaacgctaacaccatgtactagaacaaaatgcttctgtttttggt |
6842143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 33760654 - 33760734
Alignment:
| Q |
79 |
tgaccagatgattctaaacgtggcttaagcttgtaccaattccaggcacccatgccagaaccatgtaccagaacaaaatgc |
159 |
Q |
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||||||| ||||||||||||||||| | |||||||||| |||| ||||| || || ||||||||| |||||| ||||| |
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| T |
33760654 |
tgaccagcagattctaaacgtggcttgatcttgtaccaactccaagcaccatggcaagcaccatgtacaagaacataatgc |
33760734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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