View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_11 (Length: 496)
Name: NF14493_low_11
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 62 - 478
Target Start/End: Original strand, 3598099 - 3598515
Alignment:
| Q |
62 |
aagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagtagtagaaatgtgaatctcaatttcactactaaaaatagtcacatc |
161 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3598099 |
aagcatgaaatatagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcactactaaaaatagtcacatc |
3598198 |
T |
|
| Q |
162 |
tcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttgacataaaagttttaagactaaagattt |
261 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598199 |
tcgaatcaagttaatgatacttcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttgacataaaagttttaagactaaagattt |
3598298 |
T |
|
| Q |
262 |
aggaactttacctgaagttttacaaaacaatcacaggaagtgataatcatgattatccaaaaacttttgcattttcacggcatagtcatccgataatgtg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3598299 |
aggaactttacctgaagttttacaaaacaatcacaggaagtgataatcatgattatccaaaaacttttacattttcacggcatagtcatccgataatgtg |
3598398 |
T |
|
| Q |
362 |
caatgaattctattcccccctacaaagtgtaaattaatcaaataaaaagcacgtaattatcagcaattattctgcattgagtaatgttaatagattaaga |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598399 |
caatgaattctattcccccctacaaagtgtaaattaatcaaataaaaagcatgtaattatcagcaattattctgcattgagtaatgttaatagattaaga |
3598498 |
T |
|
| Q |
462 |
cttactctaaatcttct |
478 |
Q |
| |
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||||||||||||||||| |
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| T |
3598499 |
cttactctaaatcttct |
3598515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 478
Target Start/End: Complemental strand, 4356973 - 4356506
Alignment:
| Q |
15 |
caaaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaa |
114 |
Q |
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||||||||||||||||||||||||||| |||||| | ||| | |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
4356973 |
caaaggctaatacattattcaacaaaaatatatttatacatagtcataagcatgaaata--gaggaaataaagaaagaaatataagaaataacagacaaa |
4356876 |
T |
|
| Q |
115 |
gtagtagaaatgtgaatctcaatttcactactaaaaatagtcac--atctcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaatt |
212 |
Q |
| |
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|||||||||| ||||||||||||||| ||| |||||||||||| ||||| | || |||| ||||| |||| ||||||| ||||| ||||||||||| |
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| T |
4356875 |
gtagtagaaacgtgaatctcaatttcgctaacaaaaatagtcacgtatctcaactcaagttcctgatacttcaaaggttgagatcaatatatgatgaata |
4356776 |
T |
|
| Q |
213 |
ttatataaaaacactatagttgacataaaagttttaagactaaagatttaggaactttacctgaagttttacaaaacaatcacaggaagtgat-aatcat |
311 |
Q |
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||||| |||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||| || |||| |||||||||| ||| |||||| |
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| T |
4356775 |
ttatagaaaaacactatagttgacataaaaatttaaatactaaagattaaggaactttacctgaagttttgcagaacagtcacaggaagcgatgaatcat |
4356676 |
T |
|
| Q |
312 |
gattatccaaaaacttttgcattttcacggcatagtcatccgataatgtgcaatgaattctattcccccctacaaagtgtaaattaatcaaataaaa--- |
408 |
Q |
| |
|
|||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||| |
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| T |
4356675 |
gattatcctaaaattgttgcattctcacggcatagtcatccgataatgtgcaatgaattctatt-ccccctacgaagtgcaaattaatcaaattaaaagt |
4356577 |
T |
|
| Q |
409 |
-agcacgtaattatcagcaattattctgcattgagtaatgttaatagattaagacttactctaaatcttct |
478 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4356576 |
tagcacataattatcaacaattgttctgcattgagtaatgttaatagattaagacttgctctaaatcttct |
4356506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 24455738 - 24455633
Alignment:
| Q |
17 |
aaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagt |
116 |
Q |
| |
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||||||||| ||| ||||||||||| || ||| || |||||| |||||||||||| | |||||| ||| |||||||| | |||||||| || |||| |
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| T |
24455738 |
aaggctaatgcataattcaacaaaaataggatgatactcaatcagaagcatgaaata--gaggaaatgaagcaagaaatagatgaaataactaacgaagt |
24455641 |
T |
|
| Q |
117 |
agtagaaa |
124 |
Q |
| |
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|||||||| |
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|
| T |
24455640 |
agtagaaa |
24455633 |
T |
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