View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14493_low_12 (Length: 474)

Name: NF14493_low_12
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14493_low_12
NF14493_low_12
[»] chr2 (10 HSPs)
chr2 (14-457)||(35281843-35282286)
chr2 (14-457)||(35290688-35291125)
chr2 (263-457)||(35323074-35323268)
chr2 (15-184)||(35307811-35307980)
chr2 (15-184)||(35322812-35322981)
chr2 (263-457)||(35308065-35308259)
chr2 (14-184)||(35275933-35276103)
chr2 (263-433)||(35313384-35313554)
chr2 (15-184)||(35312599-35312768)
chr2 (263-456)||(35276903-35277099)
[»] chr3 (2 HSPs)
chr3 (262-315)||(43186758-43186811)
chr3 (263-312)||(43179595-43179644)
[»] chr5 (1 HSPs)
chr5 (265-312)||(36189598-36189645)
[»] chr1 (1 HSPs)
chr1 (73-129)||(7265912-7265968)


Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 35281843 - 35282286
Alignment:
Q  14 aagaatatcagcacaagagacagtggcactgcaagcggcttcaacactagttttaatggcatcaatcacttcaaaacccctagctgaatttttgttaggt 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35281843 aagaatatcagcacaagagacagtggcactgcaagcagcttcaacactagttttaattgcatcaatcacttcaaaacccctagctgaatttttgttaggt 35281942  T
Q  114 ccagcatttttctcaccggtaaatgtggaagtgtcatccaataagattgatccatcacatccctacaaaattagcaaataaattgacatgttaatgtctt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35281943 ccagcatttttctcaccggtaaatgtggaagtgtcatccaataagattgatccatcacatccctacaaaattagcaaataaattgacatgttaatgtcta 35282042  T
Q  214 atgcaaataaacaaattatttttcaacattaatagtatcttaatgtgagcttacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcacca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35282043 atgcaaataaacaaattatttttcaacattaatagtatcttaatgtgagcttacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcacca 35282142  T
Q  314 atccgagcttcattattgatagctttggtcatttccctgcgcactatggtttgaaggctagggcaagttcttccatagaagttattaacaagttgtgcat 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||    
T  35282143 atccgagcttcattattgatagctttggtcatttccctgcgcactatggtttgaaggctagggcaagttcttccatagaagttaggaaaaagttgtgcat 35282242  T
Q  414 tgatagaacaagcaaagagagaaagaatagagaatgtaacaaat 457  Q
    || |||||||||||||||||||||||||||||| ||||||||||    
T  35282243 tggtagaacaagcaaagagagaaagaatagagagtgtaacaaat 35282286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 35290688 - 35291125
Alignment:
Q  14 aagaatatcagcacaagagacagtggcactgcaagcggcttcaacactagttttaatggcatcaatcacttcaaaacccctagctgaatttttgttaggt 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35290688 aagaatatcagcacaagagacagtggcactgcaagcagcttcaacactagttttaattgcatcaatcacttcaaaacccctagctgaatttttgttaggt 35290787  T
Q  114 ccagcatttttctcaccggtaaatgtggaagtgtcatccaataagattgatccatcacatccctacaaaattagcaaataaattgacatgttaatgtctt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35290788 ccagcatttttctcaccggtaaatgtggaagtgtcatccaataagattgatccatcacatccctacaaaattagcaaataaattgacatgttaatgtcta 35290887  T
Q  214 atgcaaataaacaaattatttttcaacattaatagtatcttaatgtgagcttacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcacca 313  Q
    |||||||||||||||||||||||||||||      |||||||| |||  |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35290888 atgcaaataaacaaattatttttcaacat------tatcttaaagtggacttacatttacaaagcaatcatggaagaacaaacgaagtatagaagcacca 35290981  T
Q  314 atccgagcttcattattgatagctttggtcatttccctgcgcactatggtttgaaggctagggcaagttcttccatagaagttattaacaagttgtgcat 413  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  35290982 attcgagcttcattattgatagctttggtcatttccctgcgcacaatggtttgaaggctagggcaagttgtaccatagaagttattaacaagttgtgcat 35291081  T
Q  414 tgatagaacaagcaaagagagaaagaatagagaatgtaacaaat 457  Q
    || |||||||||| |||||||||| |||||||| ||||||||||    
T  35291082 tggtagaacaagctaagagagaaaaaatagagagtgtaacaaat 35291125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 263 - 457
Target Start/End: Original strand, 35323074 - 35323268
Alignment:
Q  263 cttacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcaccaatccgagcttcattattgatagctttggtcatttccctgcgcactatgg 362  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |||||| | |||||||| |||| ||||||||||||||||||||    
T  35323074 cttacatttacaaaacaatcatggaagaacaagcgaagtatagaagccccaatccgggcttcagttttgatagcattggccatttccctgcgcactatgg 35323173  T
Q  363 tttgaaggctagggcaagttcttccatagaagttattaacaagttgtgcattgatagaacaagcaaagagagaaagaatagagaatgtaacaaat 457  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||||| ||| |||| ||||||||||    
T  35323174 tttggaggctagggcaagttcttccatagaagttattaacaagttgtgcgttggtagaacaagctaggagagaaaaaatggagagtgtaacaaat 35323268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 35307811 - 35307980
Alignment:
Q  15 agaatatcagcacaagagacagtggcactgcaagcggcttcaacactagttttaatggcatcaatcacttcaaaacccctagctgaatttttgttaggtc 114  Q
    ||||||||||||||||| ||||||||| ||||||  ||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||     
T  35307811 agaatatcagcacaagatacagtggcattgcaagaagcttcaacactggttttaatggtgtcaatcacttcgaaacccctagctgaatttttgttaggtg 35307910  T
Q  115 cagcatttttctcaccggtaaatgtggaagtgtcatccaataagattgatccatcacatccctacaaaat 184  Q
    | |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  35307911 cggcatttttctcaccggtaaaggtggcagtgtcatccaataagattgatccatcacatccctacaaaat 35307980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 35322812 - 35322981
Alignment:
Q  15 agaatatcagcacaagagacagtggcactgcaagcggcttcaacactagttttaatggcatcaatcacttcaaaacccctagctgaatttttgttaggtc 114  Q
    ||||||||||||||||| ||||||||| |||| |  |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||     
T  35322812 agaatatcagcacaagatacagtggcattgcatgaagcttcaacactagttttaatggtatcaatcacttcgaaacccctagctgagtttttgttaggtg 35322911  T
Q  115 cagcatttttctcaccggtaaatgtggaagtgtcatccaataagattgatccatcacatccctacaaaat 184  Q
    | |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  35322912 cggcatttttctcaccggtaaaggtggcagtgtcatccaataaaattgatccatcacatccctacaaaat 35322981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 263 - 457
Target Start/End: Original strand, 35308065 - 35308259
Alignment:
Q  263 cttacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcaccaatccgagcttcattattgatagctttggtcatttccctgcgcactatgg 362  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||| || ||||||| |||  | ||||||||  | |||||||   ||||||| ||||    
T  35308065 cttacattaacaaagcaatcatggaagaacaagcgaagtatagaagccccgatccgaggttctgttttgatagcactagtcattttattgcgcacaatgg 35308164  T
Q  363 tttgaaggctagggcaagttcttccatagaagttattaacaagttgtgcattgatagaacaagcaaagagagaaagaatagagaatgtaacaaat 457  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||||||||  |||||||||| |||||||||| ||| |||| | ||||||||    
T  35308165 tttgaaggctagggcaggttgtaccatagaagttattaacaagttgtgcatttgtagaacaagctaagagagaaaaaatggagagtataacaaat 35308259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 35275933 - 35276103
Alignment:
Q  14 aagaatatcagcacaagagacagtggcactgcaagcggcttcaacactagttttaatggcatcaatcacttcaaaacccctagctgaatttttgttaggt 113  Q
    ||||||||||||||||||||| |||||  ||||||| | ||||||||| |||||||| | ||||||||||||||||||||||||||||  || |||||||    
T  35275933 aagaatatcagcacaagagacggtggctttgcaagcagtttcaacactggttttaattgtatcaatcacttcaaaacccctagctgaaccttggttaggt 35276032  T
Q  114 ccagcatttttctcaccggtaaatgtggaagtgtcatccaataagattgatccatcacatccctacaaaat 184  Q
    |||| |||||||||||||  ||||||     |||||||||||||||||||| |||| ||||||||| ||||    
T  35276033 ccagaatttttctcaccgacaaatgttcctttgtcatccaataagattgatgcatcgcatccctaccaaat 35276103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 433
Target Start/End: Original strand, 35313384 - 35313554
Alignment:
Q  263 cttacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcaccaatccgagcttcattattgatagctttggtcatttccctgcgcactatgg 362  Q
    |||||||||||||| ||||| ||||||||||| || ||||||||||| ||||| || ||||| || ||||||||  ||||||||    ||||||| ||||    
T  35313384 cttacatttacaaaacaatcatggaagaacaagcggagtatagaagccccaatacgggcttcttttttgatagcactggtcattgtattgcgcacaatgg 35313483  T
Q  363 tttgaaggctagggcaagttcttccatagaagttattaacaagttgtgcattgatagaacaagcaaagaga 433  Q
    ||||||||| ||| ||||||    |||||||||||| || ||||||||||||| |||||||||| ||||||    
T  35313484 tttgaaggcaaggacaagtttggtcatagaagttatcaataagttgtgcattggtagaacaagctaagaga 35313554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 35312599 - 35312768
Alignment:
Q  15 agaatatcagcacaagagacagtggcactgcaagcggcttcaacactagttttaatggcatcaatcacttcaaaacccctagctgaatttttgttaggtc 114  Q
    |||||||| |||||||||||||||||| |||| |  |||||||||||  ||||||||  |||||||||||| |||||| |  |||| || || ||||||     
T  35312599 agaatatcggcacaagagacagtggcattgcatgaagcttcaacactgtttttaatgttatcaatcacttcgaaacccttgactgagttgttattaggtt 35312698  T
Q  115 cagcatttttctcaccggtaaatgtggaagtgtcatccaataagattgatccatcacatccctacaaaat 184  Q
      || |||||||||||| |||| |||  ||| ||||||||||| ||||||||||| ||||||||||||||    
T  35312699 gggcttttttctcaccgataaaggtgtcagtatcatccaataaaattgatccatcgcatccctacaaaat 35312768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 263 - 456
Target Start/End: Original strand, 35276903 - 35277099
Alignment:
Q  263 cttacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcaccaatccgagcttcattattgatagctttggtcatttccctgcgcactatgg 362  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| ||||| || | |||| ||||| |||||||  ||||||| ||||    
T  35276903 cttacatttacaaagcaatcatggaagaacaatcgaagtatagaagcccccatccgggcttccttttggataactttgatcatttcattgcgcacaatgg 35277002  T
Q  363 tttgaaggctagggcaagttcttccatagaagttattaacaagttgtgcat---tgatagaacaagcaaagagagaaagaatagagaatgtaacaaa 456  Q
    |||| ||  ||| ||||||| || |||| |||||   |  |||||||||||   || | |||||||| ||||||||||  ||||||| |||||||||    
T  35277003 tttggagattagagcaagtttttgcataaaagttcggagaaagttgtgcattaatggttgaacaagctaagagagaaaatatagagagtgtaacaaa 35277099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 43186811 - 43186758
Alignment:
Q  262 gcttacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcaccaat 315  Q
    ||||||||| ||||||||||||||||||||||| || || ||||||||||||||    
T  43186811 gcttacattgacaaagcaatcgtggaagaacaagcggaggatagaagcaccaat 43186758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 43179644 - 43179595
Alignment:
Q  263 cttacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcacc 312  Q
    |||||||| ||||||||||||||||||||||| || || ||||| |||||    
T  43179644 cttacattgacaaagcaatcgtggaagaacaagcggaggatagaggcacc 43179595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Complemental strand, 36189645 - 36189598
Alignment:
Q  265 tacatttacaaagcaatcgtggaagaacaaacgaagtatagaagcacc 312  Q
    |||||| |||||||||||||||||||||||||| || | |||||||||    
T  36189645 tacattaacaaagcaatcgtggaagaacaaacgcagaagagaagcacc 36189598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 7265912 - 7265968
Alignment:
Q  73 catcaatcacttcaaaacccctagctgaatttttgttaggtccagcatttttctcac 129  Q
    |||| |||||||||||||| | | | |||||||||||||||||| ||||||| ||||    
T  7265912 catcgatcacttcaaaacctcgaacggaatttttgttaggtccaccatttttttcac 7265968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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