View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_14 (Length: 442)
Name: NF14493_low_14
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 427
Target Start/End: Original strand, 43977149 - 43977563
Alignment:
| Q |
13 |
aaaatacatgacaataaataccactaagacaaggaatacaacttcagctagaagggccaacaagatcttcttctgaaattgattaaaattcacccaatcc |
112 |
Q |
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| T |
43977149 |
aaaatacatgacaataaataccactaagacaaggaatacaacttcagctagaagggccaacaagatcttcttctgaaattgattaaaattcacccaatcc |
43977248 |
T |
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| Q |
113 |
accaaccaattagaacaaaaattatagaatcagtaatattgatcaattgttaagtgaaaaaactaatgttttaaaaattgaacttgacatcaaaccggtc |
212 |
Q |
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| T |
43977249 |
accaaccaattagaacaaaaattatagaatcagaaatattgatcaattgttaagtgaaaaaactaatgttttaaaaattgaacttgacatcaaaccggtc |
43977348 |
T |
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| Q |
213 |
agacttttggatcatggttcaactagtttaaatcgcttgaaccaaaattaaacaatccaacatttaagtaactgaacatatcatagacaatgttcatggt |
312 |
Q |
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| T |
43977349 |
agacttttggatcatggttcaactggtttaaatcgcttgaaccaaaattaaacaatcctacatttaagtaactgaacatatcatagacaatgttcatggt |
43977448 |
T |
|
| Q |
313 |
ttgaccttcgattcgatttttaaaacattgaaaagaaaaatagactataacttaattaataagtttgagatgtttctcacacgcttactcccatttgagt |
412 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43977449 |
ttgaccttcagttcgatttttaaaacattgaaaggaaaaatagactgtaacttaattaataagtttgagatgtttctcacacgcttactcccatttgagt |
43977548 |
T |
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| Q |
413 |
atacgaagaagatgg |
427 |
Q |
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| T |
43977549 |
atacgaagaagatgg |
43977563 |
T |
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