View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14493_low_16 (Length: 435)
Name: NF14493_low_16
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_16 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Complemental strand, 11801669 - 11801248
Alignment:
| Q |
14 |
aatatctaaacaaaggaggtggtgaagcatttggaccttgaaaattactcttatgaataacaggcctatcttcacaatcaaacataagttccaaatcagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11801669 |
aatatctaaacaaaggaggtggtgaagcatttggaccttgaaaattacccttatgaataacaggcctatcttcacaatcaaacataagttccaaatcagg |
11801570 |
T |
|
| Q |
114 |
taacttgccaggaaacattctcaataattgcaaaataccccacaaagtgaacacatctcttgtttgaattgacttcttatacttctccacatacattttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11801569 |
taacttgccaggaaacattctcaataattgcaaaataccccacaaagtgaacacatctcttgtttgaattgacttcctatacttctccacatacattttt |
11801470 |
T |
|
| Q |
214 |
ccatccacaatcacaaccttaaaatttgctgttctttttgcaccctccaacatttccctagtgatccctttttctttccatgcttttaaatcttcatgga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11801469 |
ccatccacaatcacaaccttaaaatttgctgttctttttgcaccctccaacatttccctagtgatccctttttctttccatggttttaaatcttcatgga |
11801370 |
T |
|
| Q |
314 |
tccatctaaagaatgagggacaagtatggctattttgatttgttggcttatgttttgtagggtagtctcttggacatgtttgtgtctctttttctccatt |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11801369 |
tccatctaaagaatgaaggacaagtatggctattttgatttgttgggttatgttttgtagggtagtctcttggacatgtttgtgtctctttttctccatt |
11801270 |
T |
|
| Q |
414 |
ggagcatctaagtgcaaattct |
435 |
Q |
| |
|
|| ||||||||||| ||||||| |
|
|
| T |
11801269 |
ggtgcatctaagtggaaattct |
11801248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 11808951 - 11808569
Alignment:
| Q |
14 |
aatatctaaacaaaggaggtggtgaagcatttggaccttgaaaattactcttatgaataacaggcctatcttcacaatcaaacataagttccaaatcagg |
113 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||| ||| | | ||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11808951 |
aatatctaaacaatggtggtggtgaagcatttggtccttgaaacttatccaaaggaacaacaggcttatcttcacaatcaaacataagttccaaatcagg |
11808852 |
T |
|
| Q |
114 |
taacttgccaggaaacattctcaataattgcaaaataccccacaaagtgaacacatctcttgtttgaattgacttcttatacttctccacatacattttt |
213 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
11808851 |
caacttgccagggtacaatctcaataattgcaaaataccccacaaagtgaacacatctcttgtttgaattgacttcctatacttttccacatacattttt |
11808752 |
T |
|
| Q |
214 |
ccatccacaatcacaaccttaaaatttgctgttctttttgcaccctccaacatttccctagtgatccctttttctttccatgcttttaaatcttcatgga |
313 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||| ||||||| | |||||| | ||| ||||||||||||||| |||||| ||| | ||||||||||| |
|
|
| T |
11808751 |
ccatccacaatcacaagcttgaaatgtgctgtcttttttgcctttttcaacatgttccttgtgatccctttttctctccatggtttaagatcttcatgga |
11808652 |
T |
|
| Q |
314 |
tccatctaaagaatgagggacaagtatggctattttgatttgttggcttatgttttgtagggtagtctcttggacatgtttgt |
396 |
Q |
| |
|
||||||||||| ||||||||||| |||| | || |||||||||| |||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
11808651 |
tccatctaaagtatgagggacaaacatggttgttgagatttgttgggttatgtgttgtagggttgtctcttggacatttttgt |
11808569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University