View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_18 (Length: 416)
Name: NF14493_low_18
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 42420139 - 42420528
Alignment:
| Q |
18 |
ctaattagcgtagattgaattagatgtataaaatataggtcattatgtgtctcattgtgcacggatctttaaagggccttttctttttcttttatgaact |
117 |
Q |
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| T |
42420139 |
ctaattagcgtagattgaattagatgtataaaatataggtcattatgtgtctcattgtgcacggatctttaaaggtccttttctttttcttttatgaact |
42420238 |
T |
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| Q |
118 |
ttataattttcatactatagttttatacaccaaatttacacttttcttgatggaaatagaaattaagtat-aaaaatgtatttaaatacaatttcacgtt |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42420239 |
ttataattttcataatatagttttatacaccaaatttacacttttcttgatggaaatagaaattaagtataaaaaatgtatttaaatacaatttcacgtt |
42420338 |
T |
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| Q |
217 |
gttcttatcatctaaaaaatagtataagaattttgcaaagtaaattaaatgacaaaattgtacttttggccttttattttcatttgtta-nnnnnnnngc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
42420339 |
gttcttatcatctaaaaaatagtataagaattttgcaaagtaaattaaatgacaaaattgaacttttggccttttattttcatttgttatttttttttgt |
42420438 |
T |
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| Q |
316 |
taagctaatcatttatgtttgtaaatatttacacccttgaacctaactgataaaattgctaaattcaatcaatacaatttctaagcctat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42420439 |
taagctaatcatttatgtttgtaaatatttacacccttgaacctaactgatacaattgctaaattcaatcaatacaatttctaagcctat |
42420528 |
T |
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