View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_2 (Length: 870)
Name: NF14493_low_2
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_2 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 493 - 870
Target Start/End: Complemental strand, 35211157 - 35210754
Alignment:
| Q |
493 |
tggtttatttacctcttgtgttttaagaaaggacacaacgtatttgatgaggatagtattagtattgagattgttta----------------aattgat |
576 |
Q |
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| T |
35211157 |
tggtttatttacctcttgtgttttaagaaaggacacaacgtatttgatgaggatagtattagtattgagattgtttaggtaacctggtgcctaaattgat |
35211058 |
T |
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| Q |
577 |
aactttatgttcaccccccattcattttgtgtaaatattgttattttattaaagaatgagaatgaatattctaattattttggtatgggatggtacaact |
676 |
Q |
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| T |
35211057 |
aactttatgttcaccccccattcattttgtgtaaatattgttattttattaaagaatgagaatgaatattctaattattttggtatgggatggtacaact |
35210958 |
T |
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| Q |
677 |
ttgcagcatcagcagcacttggaatatactatggtgattgtcctaactatgatgaccggttttaaagagatacttttacatataaatcggtcacaaattt |
776 |
Q |
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| T |
35210957 |
ttgcagcatcagcagcacttggaatatactatggtgattgtcctaactatgatgaccggttttaaagagatgcttttacatataaatcggtcacaaattt |
35210858 |
T |
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| Q |
777 |
tccatgttgatcatgaatcaaactaccataaattgagcttctattgttggtaaaatgtg----------attcagtttgagacgtccaataggaagatga |
866 |
Q |
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| T |
35210857 |
tccatgttgatcatgaatcaaactaccataaattgagcttctattgtcgttaaaatgtgatacatcaacatttagtttgagacgtccaataggaagatga |
35210758 |
T |
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| Q |
867 |
accc |
870 |
Q |
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| T |
35210757 |
accc |
35210754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 172 - 405
Target Start/End: Complemental strand, 35211478 - 35211245
Alignment:
| Q |
172 |
tcaataacttactatttgttgaattcctaataagatatgtatttaggacctatggtagcatgacacttatctttttagtttttctnnnnnnnnnnngagt |
271 |
Q |
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| T |
35211478 |
tcaataccttactatttgttgaattcctaataagatatgtatttaggacctatggtagcatggcccttatctttttagtttttctaaaaaaaaaaagagt |
35211379 |
T |
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| Q |
272 |
attttaaagacaataccccactttatataagtaccaaacatttatttgtatttaattnnnnnnnntatagtgtgaaatttaattcttatgagatgcatga |
371 |
Q |
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| T |
35211378 |
attttaaatacaataccccactttatataagtaccaaacatttatttgtatttaattaaaaaaaatatagtgtgaaatttaattcttatgagatgcatga |
35211279 |
T |
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| Q |
372 |
gtttaaaaacttttctttgattcttaggcgtagg |
405 |
Q |
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| T |
35211278 |
gtttaaaaacttttctttgattcttaggcgtagg |
35211245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 35211679 - 35211585
Alignment:
| Q |
1 |
tgacaagactcttaatggttaataaatggttttcattccctaaaataaaagttttcattagatattcaaaaagataaataaacgttgggtgtgtactagc |
100 |
Q |
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| T |
35211679 |
tgacaagactcttaatggttaataaatggttttcattccctaaaataaaagttttcattagacattcaa------aaataaacgttgggtgtgtactagc |
35211586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 771 - 840
Target Start/End: Original strand, 24351780 - 24351849
Alignment:
| Q |
771 |
aaattttccatgttgatcatgaatcaaactaccataaattgagcttctattgttggtaaaatgtgattca |
840 |
Q |
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| T |
24351780 |
aaatttaccatgttgatcacgaattaaactttcataaactgaacttctattgctgataaaatgtgattca |
24351849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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