View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_20 (Length: 405)
Name: NF14493_low_20
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 109 - 392
Target Start/End: Original strand, 16400676 - 16400959
Alignment:
| Q |
109 |
taaccacagagaacctgataatcattcacttaccggttggtacatttgaagccaaatttgataggacaagtataacaagagcaagtatcgctattccact |
208 |
Q |
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| T |
16400676 |
taaccatagaggatctgataatcattcacttaccggttggtacatttgaagccaaatttgataggacaagtataacaagagcaagtatcgctattccact |
16400775 |
T |
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| Q |
209 |
agaacgatcaactcgcgaataaggctccatcaactcccataaagcacttggaattccagttttgttgaatccatctactgtgataaacattccacaaaag |
308 |
Q |
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| T |
16400776 |
agaacgatcaactcgcgaataaggctccatcaactcccataaagcacttggaattccagttttgttgaatccatctactgtgataaacattccacaaaag |
16400875 |
T |
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| Q |
309 |
aatatcaaaagtgaatatgaaacctgtatcaacatgaaaaagaaaattctaagagatttgttcaatcttcaactagcacaagaa |
392 |
Q |
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| T |
16400876 |
aatatcaaaagtgaatatgaaacctgtatcaacatgaaaaagaaaattctaagatatttgttcaatcttcaactagcacaagaa |
16400959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 121 - 396
Target Start/End: Complemental strand, 14306287 - 14306012
Alignment:
| Q |
121 |
acctgataatcattcacttaccggttggtacatttgaagccaaatttgataggacaagtataacaagagcaagtatcgctattccactagaacgatcaac |
220 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
14306287 |
acctaataatcattcacttaccagttggtacatttgaagccaaatttgataggacaagtataacgagagaaagtatcgctattccactagaacgatcaac |
14306188 |
T |
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| Q |
221 |
tcgcgaataaggctccatcaactcccataaagcacttggaattccagttttgttgaatccatctactgtgataaacattccacaaaagaatatcaaaagt |
320 |
Q |
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| T |
14306187 |
tcgtgaataaggctccatcatctcccataaagcacttggaattccagttttgttgaatccatttactgtgataaacattccacaaaagaatatcaaaagt |
14306088 |
T |
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| Q |
321 |
gaatatgaaacctgtatcaacatgaa-aaagaaaattctaagagatttgttcaatcttcaactagcacaagaataat |
396 |
Q |
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|||||||||||||||||||||| ||| ||| |||| || |||| ||||||||||| || |||||||||||||||||| |
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| T |
14306087 |
gaatatgaaacctgtatcaacaagaagaaaaaaaagtc-aagacatttgttcaattttgaactagcacaagaataat |
14306012 |
T |
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