View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_22 (Length: 380)
Name: NF14493_low_22
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 28876935 - 28877168
Alignment:
| Q |
19 |
ttttccccttcccattctttcactcattattttattctaaattataatacttctatagcatttattcttctgggtttatgtttaaaataattaataaatg |
118 |
Q |
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| T |
28876935 |
ttttccccttcccattctttcactcattattttattctaaattataatacttctatagcatttattcttctgggtttatgtttcaaaaaattaataaatg |
28877034 |
T |
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| Q |
119 |
ctatttttaaaaacagagtattttattgattgtaagtatgtttgattaaaattattgagtagaatgtaannnnnnnnnnattgtaaagttttattattat |
218 |
Q |
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| T |
28877035 |
ctatttttaaaaacagagtattttattgattgtaagtatgtttgattaaaattattgagtagaatgtaattttttttttatcgtaaagttttattatttt |
28877134 |
T |
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| Q |
219 |
aacttttaaaactgttcttgtattattctgggta |
252 |
Q |
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| T |
28877135 |
aacttttaaaactgttattgtattaatctgggta |
28877168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 28877233 - 28877284
Alignment:
| Q |
316 |
aaaaacagagtattttgtgattgtaagcatgatggattaagattattgagta |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28877233 |
aaaaacagagtattttgtgattgtaagcatgatggattaagattattgagta |
28877284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 28877233 - 28877292
Alignment:
| Q |
127 |
aaaaacagagtattttattgattgtaagtatgtttgattaaaattattgagtagaatgtaa |
187 |
Q |
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| T |
28877233 |
aaaaacagagtattttgt-gattgtaagcatgatggattaagattattgagtagaatgtaa |
28877292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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