View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_25 (Length: 336)
Name: NF14493_low_25
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 11685743 - 11686050
Alignment:
| Q |
15 |
atagggacaacatccagattgcgagaaaaaggtaagcctctctccaaagtgtaattcccctcaatttcctcataatgagcaaagttttccctgaaattcg |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11685743 |
atagggacaacatccagattgcgagaaaaaggtaaccctctctccaaagtgtaattcccctcaatttcctcataatgagcaaagttttccctgaaattcg |
11685842 |
T |
|
| Q |
115 |
gaaaatctctgttactaggaagctctatacataatgccgaagagtgcccaatacaactgaaaggtgtgaaatctatggaacgggtccattgctcatcagg |
214 |
Q |
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| T |
11685843 |
gaaaatctctgttactaggaagctctatacataatgccgaagagtgcccaatacaactgaaaggtgtgaaatctatggaacgggtccattgctcatcagg |
11685942 |
T |
|
| Q |
215 |
ggaatctttataataattcttcgcaggatcttcttatacatttgttgaattgggaatataaagctcaaaaacctgaggagcaccaattaactacaaacag |
314 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11685943 |
ggaatctttataataattcttcgcaggatcttcgtatacattttttgaattgggaatataaagctcaaaaacctgaggagcaccaattaactacaaacag |
11686042 |
T |
|
| Q |
315 |
aagagaaa |
322 |
Q |
| |
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|||||||| |
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| T |
11686043 |
aagagaaa |
11686050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 11689755 - 11690062
Alignment:
| Q |
15 |
atagggacaacatccagattgcgagaaaaaggtaagcctctctccaaagtgtaattcccctcaatttcctcataatgagcaaagttttccctgaaattcg |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689755 |
atagggacaacatccagattgcgagaaaaaggtaaccctctctccaaagtgtaattcccctcaatttcctcataatgagcaaagttttccctgaaattcg |
11689854 |
T |
|
| Q |
115 |
gaaaatctctgttactaggaagctctatacataatgccgaagagtgcccaatacaactgaaaggtgtgaaatctatggaacgggtccattgctcatcagg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689855 |
gaaaatctctgttactaggaagctctatacataatgccgaagagtgcccaatacaactgaaaggtgtgaaatctatggaacgggtccattgctcatcagg |
11689954 |
T |
|
| Q |
215 |
ggaatctttataataattcttcgcaggatcttcttatacatttgttgaattgggaatataaagctcaaaaacctgaggagcaccaattaactacaaacag |
314 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689955 |
ggaatctttataataattcttcgcaggatcttcgtatacattttttgaattgggaatataaagctcaaaaacctgaggagcaccaattaactacaaacag |
11690054 |
T |
|
| Q |
315 |
aagagaaa |
322 |
Q |
| |
|
|||||||| |
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| T |
11690055 |
aagagaaa |
11690062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 11636800 - 11636496
Alignment:
| Q |
18 |
gggacaacatccagattgcgagaaaaaggtaagcctctctccaaagtgtaattcccctcaatttcctcataatgagcaaagttttccctgaaattcggaa |
117 |
Q |
| |
|
|||||||||||| |||||| |||||||| | | || |||||||| ||||| | ||||| ||||||||||||||| || |||||||| |||||||||||| |
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| T |
11636800 |
gggacaacatccggattgcaagaaaaagatgatccgctctccaatgtgtattgaccctcgatttcctcataatgaacacagttttccttgaaattcggaa |
11636701 |
T |
|
| Q |
118 |
aatctctgttactaggaagctctatacataatgccgaagagtgcccaatacaactgaaaggtgtgaaatctatggaacgggtccattgctcatcagggga |
217 |
Q |
| |
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||||||||||||||| |||||||| ||||| || ||||| ||||||||||| || |||| ||||||||||| | |||| ||||||| ||||||||||| |
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| T |
11636700 |
aatctctgttactagaaagctctagacatatagcggaagactgcccaatacagttgcaaggagtgaaatctatcgcacggatccattggtcatcagggga |
11636601 |
T |
|
| Q |
218 |
atctttataataattcttcgcaggatcttcttatacatttgttgaattgggaatataaagctcaaaaacctgaggagcaccaattaactacaaacagaag |
317 |
Q |
| |
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|||| | ||||| |||||| |||||||| |||||| ||||||| | |||| || | ||||||||| |||||||||||||||||||||| |||||| |
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| T |
11636600 |
atctctgtaatagttcttcaaaggatctttatatacacttgttgatgtaggaacattacactcaaaaacacgaggagcaccaattaactacaagcagaag |
11636501 |
T |
|
| Q |
318 |
agaaa |
322 |
Q |
| |
|
||||| |
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|
| T |
11636500 |
agaaa |
11636496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 11628040 - 11627727
Alignment:
| Q |
18 |
gggacaacatccagattgcgagaaaaaggtaagcctctctccaaagtgtaattcccctcaatttcctcataatgagcaaagttttccctgaaattcggaa |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||| | || |||||||| |||| ||| || ||||||| || |||||||||||||||||||||||||||| |
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| T |
11628040 |
gggacaacatccagattgcaagaaaaaggtgatccgctctccaacatgtatggacccgcactttcctcgtactgagcaaagttttccctgaaattcggaa |
11627941 |
T |
|
| Q |
118 |
aatctctgttactaggaagctctatacataatgccgaagagtgcccaatacaactgaaaggtgtgaaatctatggaacgggtccattgctcatcagggga |
217 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| || ||||| ||||||||||||||| | || |||||||||| | |||| ||||||| |||||||||| |
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|
| T |
11627940 |
aatctctgttgctaggaagctctagacataaagcagaagactgcccaatacaactgcatggagtgaaatctactgcacggatccattggtcatcaggggg |
11627841 |
T |
|
| Q |
218 |
atctttataataattcttcgcaggatcttcttatac---atttg------ttgaattgggaatataaagctcaaaaacctgaggagcaccaattaactac |
308 |
Q |
| |
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||| || |||| ||||| | | ||||||| ||||| || || |||| | ||| |||||||||||||||| |||||||||||||||||||| |
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| T |
11627840 |
atcgctaaaatagttcttggaaagatcttcgtatacgttatatgcatcatctgaagtaggagaataaagctcaaaaacccgaggagcaccaattaactac |
11627741 |
T |
|
| Q |
309 |
aaacagaagagaaa |
322 |
Q |
| |
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|||||||||||||| |
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|
| T |
11627740 |
aaacagaagagaaa |
11627727 |
T |
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