View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14493_low_28 (Length: 318)
Name: NF14493_low_28
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_28 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 298
Target Start/End: Original strand, 11547056 - 11547339
Alignment:
| Q |
15 |
gaatattacttgcaccgttaatatttggatttttaaacaatggaccaataggtcttatgtggatggannnnnnngtaacatagtcaatgaaatcatgttc |
114 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
11547056 |
gaatattacttgcacctttaatatttggatttttaaacaatggaccaataggtcttatgtggatggatttttttgtaatatagtcaatgaaatcatgttc |
11547155 |
T |
|
| Q |
115 |
tagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaagga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11547156 |
tagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaagga |
11547255 |
T |
|
| Q |
215 |
tgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttctttttccaaaggaaaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11547256 |
tgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttctttttccaaaggaaaa |
11547339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 48618510 - 48618242
Alignment:
| Q |
15 |
gaatattacttgcaccgttaatatttggatttttaaacaatggaccaataggtcttatgtggatggannnnnnngtaacatagtcaatgaaatcatgttc |
114 |
Q |
| |
|
||||||| ||||||| |||||||||||||| | ||||||||||||||| ||||||| | || | | || |||||||||||||||||| || |
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|
| T |
48618510 |
gaatattttttgcacctttaatatttggattgtgaaacaatggaccaatgggtcttacgaaaattgttttttttgaaatatagtcaatgaaatcatgctc |
48618411 |
T |
|
| Q |
115 |
tagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaagga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
48618410 |
tagttcttcataggtttctactaaaacacaaaatactttagacaaattcttaaactgttctaagatgagtgtccctagaaatggaaattgactaaaagga |
48618311 |
T |
|
| Q |
215 |
tgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttct |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48618310 |
tgaagaaaatctgggatttcattgtatttaagaacttgaaaaggtaattgaacatcaatataaggttct |
48618242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 24 - 284
Target Start/End: Original strand, 48652954 - 48653214
Alignment:
| Q |
24 |
ttgcaccgttaatatttggatttttaaacaatggaccaataggtcttatgtggatggannnnnnngtaacatagtcaatgaaatcatgttctagttcttc |
123 |
Q |
| |
|
||||||| ||||| |||| || ||||||||||||||||| ||||||||| |||| || | || |||||||||||||||||| ||||||||||| |
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|
| T |
48652954 |
ttgcacctttaatgtttgagttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttc |
48653053 |
T |
|
| Q |
124 |
ataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaaggatgaagaaaa |
223 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| | || || ||| |||||||||||| |||||| |
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|
| T |
48653054 |
ataggtttctactaaaacacaaaatactttagataaattcttaatttgttctaagacgagtgtcccaaatgatagaaatgtactaaaaggatgcagaaaa |
48653153 |
T |
|
| Q |
224 |
tctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttctt |
284 |
Q |
| |
|
|||||||||||||| | |||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48653154 |
tctgggatttcattatgtttaagaactacaaaaggtaattgaacatcaatataaggttctt |
48653214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 48639744 - 48639953
Alignment:
| Q |
37 |
atttggatttttaaacaatggaccaataggtcttatgtggatggannnnnnngtaacatagtcaatgaaatcatgttctagttcttcataggtttctact |
136 |
Q |
| |
|
||||||||| |||||| | |||||||||||||||||| ||| || | || ||| || ||||||||||| ||||||||||||||||| || ||| |
|
|
| T |
48639744 |
atttggattcttaaacgaaggaccaataggtcttatggtgattgatttttttgaaatataatctatgaaatcatgctctagttcttcataggtatccact |
48639843 |
T |
|
| Q |
137 |
aaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaaggatgaagaaaatctgggatttcat |
236 |
Q |
| |
|
|| ||||||||||||||||| || | |||||||| ||||||||||||| | |||||||||||| |||| ||||||||| | ||| |||| |||||||| |
|
|
| T |
48639844 |
aatacacaaaacactttagacaagtccttaaactcttctaagatgagtttacctagaaatggaaatgggaaaaaaggatgtataaagtctgagatttcat |
48639943 |
T |
|
| Q |
237 |
tgtatttaag |
246 |
Q |
| |
|
|||||||||| |
|
|
| T |
48639944 |
tgtatttaag |
48639953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 101 - 284
Target Start/End: Original strand, 48585235 - 48585421
Alignment:
| Q |
101 |
atgaaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggat |
200 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||||||| | |||||||| |||||||| ||| | ||||| |||||| |
|
|
| T |
48585235 |
atgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagataagtccttaaactcttctaagacaagtttacctaggaatggaa |
48585334 |
T |
|
| Q |
201 |
atggactaaaaggatgaagaaaatctgggatttcattgtatttaaggacttgaaaagg---taattgaacatcaatataaggttctt |
284 |
Q |
| |
|
||| || ||||||||| | || ||||| |||||||||||||||||| ||| | |||| | ||||||||||||||||||||||| |
|
|
| T |
48585335 |
atgaacaaaaaggatgcacaagatctgagatttcattgtatttaagaactctagaagggatgagttgaacatcaatataaggttctt |
48585421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 101 - 298
Target Start/End: Original strand, 48628777 - 48628974
Alignment:
| Q |
101 |
atgaaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||| |||||||| | ||| || || || || | ||| ||||||||||||||||| ||||| |
|
|
| T |
48628777 |
atgaaatcatgctctagttcttcataggtatccgctaatacacaaaatattttggacaagttattcatatgtgacgtgatgagtgtccctagaattggat |
48628876 |
T |
|
| Q |
201 |
atggactaaaaggatgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttctttttccaaaggaaaa |
298 |
Q |
| |
|
| ||| |||||||||| |||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |||| |||||||| |
|
|
| T |
48628877 |
agggattaaaaggatgtgttaaatctgggatttcattgtatttaaggactataaaaggcaaatgaacatcaatataaggttctgtttctgaaggaaaa |
48628974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 284
Target Start/End: Original strand, 48666992 - 48667241
Alignment:
| Q |
38 |
tttggatttttaaacaatggaccaataggtcttatgtggatggannnnnnngtaacatagtcaatgaaatcatgttctagttcttcataggtttctacta |
137 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| ||| || | || ||| || ||||||||||| |||| ||||||| |||| || |||| |
|
|
| T |
48666992 |
tttggatttttaaacaaaggaccaacgggtcttatggcgattgatttttccgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccacta |
48667091 |
T |
|
| Q |
138 |
aaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaaggatgaagaaaatctgggatttcatt |
237 |
Q |
| |
|
| ||||||||||||||||| | | ||| | |||| | | ||||||||||||||| ||||||| || ||||||||| | |||||||||||||||||| |
|
|
| T |
48667092 |
atacacaaaacactttagacatgtcctttatctgtgccgtggtgagtgtccctagaattggatatctacaaaaaggatgtataaaatctgggatttcatt |
48667191 |
T |
|
| Q |
238 |
gtatttaaggacttgaaaag-gt--aattgaacatcaatataaggttctt |
284 |
Q |
| |
|
||||||||| ||| | ||| || | ||||||||||||||||||||||| |
|
|
| T |
48667192 |
gtatttaagaactatagaagagttgagttgaacatcaatataaggttctt |
48667241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 283
Target Start/End: Original strand, 48656482 - 48656661
Alignment:
| Q |
104 |
aaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatg |
203 |
Q |
| |
|
|||||| | ||||||||||||||||| || || || ||||| || ||||||| |||||||||| ||| |||| ||||||| |||||||| ||||||| |
|
|
| T |
48656482 |
aaatcaggctctagttcttcataggtatccacaaatacacacaatgctttagacaaattcttaatttgtcctaaaatgagtgggcctagaaagggatatg |
48656581 |
T |
|
| Q |
204 |
gactaaaaggatgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttct |
283 |
Q |
| |
|
| || ||||||| |||| | | || |||||| ||| |||||||||| | |||| ||||||||||||||| |||||||| |
|
|
| T |
48656582 |
tattagaaggatgcagaagaacaggaatttcactgtgtttaaggactacagaaggcaattgaacatcaatacaaggttct |
48656661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 48661460 - 48661605
Alignment:
| Q |
101 |
atgaaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggat |
200 |
Q |
| |
|
||||||||||| |||| ||||||| |||| || ||||| ||||||||||||||||| | | ||| | ||| | | | ||||||||||||| |||| |
|
|
| T |
48661460 |
atgaaatcatgctctaattcttcaaaggtatccactaatacacaaaacactttagacatgtcctttatttgtgccgtggtaagtgtccctagaattggaa |
48661559 |
T |
|
| Q |
201 |
atggactaaaaggatgaagaaaatctgggatttcattgtatttaag |
246 |
Q |
| |
|
||||| |||||||||| | | ||||||||||||| ||||||||||| |
|
|
| T |
48661560 |
atggattaaaaggatgtatataatctgggatttcgttgtatttaag |
48661605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 94 - 301
Target Start/End: Complemental strand, 19665787 - 19665580
Alignment:
| Q |
94 |
atagtcaatgaaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctaga |
193 |
Q |
| |
|
|||||| ||| ||||||| |||||||| ||||| | || || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19665787 |
atagtcgatgtaatcatgctctagttcatcataactatccaccaatacacaaaacactttagataaattcttaaactgttctaaaatgagtgtccctaga |
19665688 |
T |
|
| Q |
194 |
aatggatatggactaaaaggatgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttctttttccaaag |
293 |
Q |
| |
|
|||| |||| |||||||||||| |||||||| || ||||| || | |||||| || |||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
19665687 |
aatgaatatttactaaaaggatgtagaaaatccggtatttcgttatgtttaagagctacgaaaggtaattgagcatcaatataaggttctttttccgaag |
19665588 |
T |
|
| Q |
294 |
gaaaacgt |
301 |
Q |
| |
|
| |||||| |
|
|
| T |
19665587 |
ggaaacgt |
19665580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 101 - 283
Target Start/End: Original strand, 27228078 - 27228260
Alignment:
| Q |
101 |
atgaaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggat |
200 |
Q |
| |
|
|||||||||||||| | ||| |||||||| || || || ||||||||||||||||| || ||||||| |||||| || | ||||| ||| |||||||||| |
|
|
| T |
27228078 |
atgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggat |
27228177 |
T |
|
| Q |
201 |
atggactaaaaggatgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttct |
283 |
Q |
| |
|
| ||||||| |||||| |||||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
27228178 |
acttactaaaacaatgaaggaaatctggtatttcattgtatttaaggactagagaagacaattgaacatcaatataaggttct |
27228260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 27223803 - 27224070
Alignment:
| Q |
17 |
atattacttgcaccgttaatatttggatttttaaacaatggaccaataggtcttatgtggatggannnnnnngtaacatagtcaatgaaatcatgttcta |
116 |
Q |
| |
|
|||||||||||| ||||| | ||| ||||||||||| ||||||||||||||||| | || || | ||||||||| |||||||||||||||| |
|
|
| T |
27223803 |
atattacttgcatttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttcta |
27223902 |
T |
|
| Q |
117 |
gttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaaggatg |
216 |
Q |
| |
|
|||| ||||| || || || || ||||||||||||||||| || ||||||| ||||| | |||| |||||| |||| || | ||| ||||||| || |
|
|
| T |
27223903 |
gttcctcatacgtatcaaccaatacacaaaacactttagacaagttcttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttg |
27224002 |
T |
|
| Q |
217 |
aagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttctt |
284 |
Q |
| |
|
|| |||||| ||||| |||||||| ||||| ||| | ||| ||||||||||||||||| ||||||| |
|
|
| T |
27224003 |
aacaaaatccgggatctcattgtacttaagaactacagaagacaattgaacatcaatatatggttctt |
27224070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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