View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_3 (Length: 799)
Name: NF14493_low_3
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 14267476 - 14267048
Alignment:
| Q |
1 |
aagagaggaaaaacttgtcttcacaccgttgccatacttacacatacatacaggatcatagggagtcatcctcctcattttgggtttatagtataaattt |
100 |
Q |
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| T |
14267476 |
aagagaggaaaaacttgtcttcacaccgttgccatacttaca--tacatacaggatcatagagagtcattcacctcattttgggtttatagtataaattt |
14267379 |
T |
|
| Q |
101 |
atgtataacttgttacatggaaaagttgtgatgcctttcgatctctcttttaattttcacatgtgtaataatatattcttaacattcacgataagatatt |
200 |
Q |
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| T |
14267378 |
atgcataacttgttacatggaaaagttgtgatgcctttcgatctctcttttaattttcacatgtgtaataatatattcttaacatttacgatgagatatt |
14267279 |
T |
|
| Q |
201 |
ttgataataaatatcagttgttcgtatgtaagtgatgagagttaaactcacaacctcttttaccacttcaatccttaatatatccctctcccaaagcacc |
300 |
Q |
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| T |
14267278 |
ttgataataaatattagt-gttagtttgtcagtgatgagagttaaactcacaacctcttttaccacttcaatccttaatatatccctctcccaaagcacc |
14267180 |
T |
|
| Q |
301 |
aattcacctaactatataagtccatattcgggcctaataattttcaataaatcaggaaaaatacttagttaggtacaactatttaggca-ttctcttttg |
399 |
Q |
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| T |
14267179 |
aattcacctaactatataagtccatattcgggcctaataattttcaataaattaggaaaaatacttagttaggtacaactatttaggcatttctcttttg |
14267080 |
T |
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| Q |
400 |
acacacacatatagtatttgataaattataga |
431 |
Q |
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| T |
14267079 |
acacacacatatagtatttgataaattataga |
14267048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 498 - 783
Target Start/End: Complemental strand, 14266982 - 14266695
Alignment:
| Q |
498 |
aaagtgatgtgctaaatacttgtgacaatgtaagattttctgaataaagtatggtaaagaataatgag-gttttacactaaaacattcatcactcttaat |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
14266982 |
aaagtgatgtgctaaatacttgtgacaatgtaagattttctgaataaagtatggtaaagaataatgagtgtttaacactaaaacattcatcactcttaat |
14266883 |
T |
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| Q |
597 |
tttttcgttgatatctttctttatgatgctatagtcaagtttgagtatttgagtcaataactcctgcaatctattttaaagtttataaagtcaagttctt |
696 |
Q |
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| T |
14266882 |
tttttcgttgatatctttctttatgatgctatagtcaagtttgagtatttgagtcaataactcctgcaatctattttaaagtttataaagtcaagttctt |
14266783 |
T |
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| Q |
697 |
gccactaaaatttcatgaacacatt-cgttgtattcgatgctaaaacgaagaaatatttctacattttatttcatgcagcttggaaac |
783 |
Q |
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| T |
14266782 |
gccactaaaatttcatgaacacattccgttgtattcgatgctaaaacgaagaaatatttctacattttatttcatgcagcttggaaac |
14266695 |
T |
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