View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_33 (Length: 268)
Name: NF14493_low_33
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 46906274 - 46906037
Alignment:
| Q |
13 |
tccaagaatatgaagccatctcacccaattttttattccattacctggtaaccggttgtgccagttttgaaagaca--cacacacgttgttgcnnnnnnn |
110 |
Q |
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| T |
46906274 |
tccaataataggaagccacctcacccaattttttattccattacctggtaaccggttgtgccagttttgaaagacagacacacacgttgttgcttttttt |
46906175 |
T |
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| Q |
111 |
nnnnnnnaattagaatttaattgttgtatcatcttctccaagacaccaatggtgtctaccgatttgccatgagaaacaaacacagtacttttattcttca |
210 |
Q |
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| T |
46906174 |
tttttttaattagaatttagttgttgtatcatcttctccaagacaccgatggtgtctaccgatttgccatgagaaacaaacacagtacttttattcttca |
46906075 |
T |
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| Q |
211 |
tctttgatgtgttaaagttaatgatagatctaagtact |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
46906074 |
tctttgatgtgttaaagttaatgatagatctaagtact |
46906037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 43406323 - 43406090
Alignment:
| Q |
13 |
tccaagaatatgaagccatctcacc-caattttttattccattacctggtaaccggttgtgccagttttgaaagacacacacacgttgttgcnnnnnnnn |
111 |
Q |
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||||| |||| ||||||| |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
43406323 |
tccaataataggaagccacctcacctcaattttttattccattacctagtaatcggttgtgccagttttgaaagacagacacacgttgttgctttttttt |
43406224 |
T |
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| Q |
112 |
nnnnnnaattagaatttaattgttgtatcatcttctccaagacaccaatggtgtctaccgatttgccatgagaaacaaacacagtac-ttttattcttca |
210 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43406223 |
tttaa-aattcgaatttaattgttgtatcatcttctccaagacacaaatggtgtctaccgatttgccatgagaaacaaacacagtactttttattcttca |
43406125 |
T |
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| Q |
211 |
tctttgatgtgttaaagttaatgatagatctaagt |
245 |
Q |
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| T |
43406124 |
tctttgatgtgttaaagttaatgatagatctaagt |
43406090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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