View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14493_low_34 (Length: 254)
Name: NF14493_low_34
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 1036201 - 1036423
Alignment:
| Q |
18 |
gttaccaaacaactctcctttttgggatgcaaacgatgttaaaacatatcaaagcacaattgagatggagattatgtctaatgcattgaatgaagattta |
117 |
Q |
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| T |
1036201 |
gttaccaaacgactctcctttttgggatgcaaacgatgttaaaacatatcaaagcacaattgagatggagattatgtctaatacattgaatgaagattta |
1036300 |
T |
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| Q |
118 |
ccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagattttttcactgtgaccacagtcaatttcttctcagtaaaattcctctgt |
217 |
Q |
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| T |
1036301 |
ccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagattttttcactgtgaccacagtcaatttcttctcagtaaaattcctctgt |
1036400 |
T |
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| Q |
218 |
tgtttttcgatgcaggtgagtat |
240 |
Q |
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| T |
1036401 |
tgtttttcgatgcaggtgagtat |
1036423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 6938626 - 6938407
Alignment:
| Q |
18 |
gttaccaaacaactctcctttttgggatgcaaacgatgttaaaacatatcaaagcacaattgagatggagattatgtctaatgcattgaatgaagattta |
117 |
Q |
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||||||| | || |||||||||||| ||||| | | ||| |||||||||||||||||||| |||||| | | ||||| |||| ||||||||||| |
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| T |
6938626 |
gttaccagaaaaatctcctttttggaatgcagaaaaagttcaaacatatcaaagcacaattaagatggg---tggggctaatacattaaatgaagatttt |
6938530 |
T |
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| Q |
118 |
ccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagattttttcactgtgaccacagtcaatttcttctcagtaaaattcctctgt |
217 |
Q |
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| T |
6938529 |
ccatcagcattgcatgtgaatttaggatatagtcctacatcagaagagagattttttcactgtgaccacaaccaatttcttctcagtaatattcctcttt |
6938430 |
T |
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| Q |
218 |
tgtttttcgatgcaggtgagtat |
240 |
Q |
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||||||| || |||||| ||||| |
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| T |
6938429 |
tgtttttggaagcaggtcagtat |
6938407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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