View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14493_low_38 (Length: 242)

Name: NF14493_low_38
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14493_low_38
NF14493_low_38
[»] chr8 (35 HSPs)
chr8 (3-83)||(30143628-30143708)
chr8 (3-84)||(6599253-6599334)
chr8 (3-84)||(6674706-6674787)
chr8 (1-81)||(41366420-41366500)
chr8 (4-83)||(5689556-5689635)
chr8 (1-84)||(12702430-12702513)
chr8 (1-84)||(18105875-18105958)
chr8 (3-83)||(15213074-15213155)
chr8 (3-84)||(4731946-4732027)
chr8 (1-83)||(40321361-40321442)
chr8 (3-83)||(33352438-33352518)
chr8 (1-83)||(1345176-1345258)
chr8 (1-83)||(8154066-8154147)
chr8 (3-84)||(19945157-19945239)
chr8 (3-65)||(34254149-34254211)
chr8 (3-84)||(44304143-44304225)
chr8 (3-86)||(1746015-1746099)
chr8 (1-84)||(19491502-19491585)
chr8 (5-79)||(3303474-3303549)
chr8 (5-83)||(4733996-4734075)
chr8 (1-83)||(4743027-4743110)
chr8 (3-85)||(17982941-17983023)
chr8 (3-66)||(42498483-42498546)
chr8 (1-83)||(8965492-8965572)
chr8 (3-65)||(34256325-34256387)
chr8 (3-64)||(31218545-31218606)
chr8 (1-84)||(43036708-43036792)
chr8 (23-90)||(4162773-4162839)
chr8 (3-66)||(27811566-27811631)
chr8 (1-34)||(1292318-1292351)
chr8 (4-85)||(32901987-32902067)
chr8 (27-84)||(7493299-7493353)
chr8 (49-83)||(29796131-29796165)
chr8 (1-77)||(3073686-3073760)
chr8 (1-83)||(11711805-11711886)
[»] chr3 (36 HSPs)
chr3 (1-84)||(22834806-22834889)
chr3 (3-84)||(40734785-40734866)
chr3 (1-85)||(44700282-44700366)
chr3 (4-83)||(9666270-9666349)
chr3 (1-83)||(27305519-27305599)
chr3 (3-84)||(29813349-29813431)
chr3 (3-84)||(51399102-51399183)
chr3 (3-86)||(761132-761214)
chr3 (5-83)||(2074883-2074960)
chr3 (3-85)||(5236255-5236337)
chr3 (3-84)||(9635922-9636004)
chr3 (4-85)||(29196187-29196269)
chr3 (3-85)||(40735670-40735752)
chr3 (3-83)||(9581571-9581652)
chr3 (3-84)||(7762554-7762636)
chr3 (1-84)||(39153163-39153247)
chr3 (1-85)||(51351939-51352022)
chr3 (1-84)||(31314726-31314809)
chr3 (3-66)||(45095451-45095514)
chr3 (3-84)||(19683686-19683768)
chr3 (3-68)||(9634637-9634701)
chr3 (1-70)||(16499300-16499369)
chr3 (7-84)||(37406981-37407058)
chr3 (1-84)||(32891376-32891459)
chr3 (3-83)||(37408747-37408827)
chr3 (3-83)||(29682644-29682726)
chr3 (3-84)||(5257942-5258024)
chr3 (3-84)||(23391711-23391793)
chr3 (3-83)||(7764753-7764834)
chr3 (4-84)||(29811157-29811238)
chr3 (3-84)||(5260121-5260203)
chr3 (3-84)||(23410130-23410212)
chr3 (38-84)||(4160058-4160105)
chr3 (1-83)||(21350811-21350893)
chr3 (29-83)||(47304575-47304629)
chr3 (50-82)||(53921333-53921365)
[»] chr4 (30 HSPs)
chr4 (1-83)||(48893443-48893525)
chr4 (4-85)||(45686985-45687066)
chr4 (3-81)||(56178438-56178516)
chr4 (3-85)||(52082461-52082543)
chr4 (3-83)||(48143336-48143417)
chr4 (3-84)||(52095161-52095242)
chr4 (1-83)||(26175436-26175519)
chr4 (3-85)||(29999626-29999709)
chr4 (5-84)||(34570213-34570292)
chr4 (1-80)||(47038219-47038298)
chr4 (1-83)||(36463196-36463278)
chr4 (1-84)||(9927257-9927341)
chr4 (1-84)||(12743727-12743811)
chr4 (3-83)||(54199708-54199788)
chr4 (3-85)||(5369879-5369962)
chr4 (3-84)||(5872105-5872184)
chr4 (3-84)||(46147194-46147276)
chr4 (3-83)||(37740913-37740994)
chr4 (1-81)||(52467159-52467240)
chr4 (1-84)||(12739352-12739436)
chr4 (1-84)||(5207650-5207732)
chr4 (1-83)||(31474432-31474512)
chr4 (3-83)||(29254781-29254861)
chr4 (1-81)||(37229531-37229610)
chr4 (29-84)||(50262486-50262542)
chr4 (5-84)||(24969953-24970031)
chr4 (4-84)||(4588240-4588321)
chr4 (3-62)||(13992112-13992171)
chr4 (37-83)||(36994851-36994898)
chr4 (29-83)||(41639746-41639801)
[»] chr2 (33 HSPs)
chr2 (3-85)||(34139571-34139653)
chr2 (3-84)||(723546-723627)
chr2 (1-84)||(36987874-36987957)
chr2 (1-83)||(2334218-2334300)
chr2 (3-84)||(14633627-14633708)
chr2 (3-84)||(17057168-17057249)
chr2 (3-84)||(17085151-17085232)
chr2 (3-83)||(6594804-6594884)
chr2 (3-83)||(42362633-42362713)
chr2 (4-83)||(33162254-33162333)
chr2 (3-83)||(24885873-24885953)
chr2 (4-83)||(36773847-36773926)
chr2 (3-84)||(38312528-38312608)
chr2 (6-84)||(11690778-11690857)
chr2 (3-65)||(5723074-5723136)
chr2 (3-83)||(11151395-11151476)
chr2 (1-85)||(11049831-11049914)
chr2 (5-81)||(13122049-13122124)
chr2 (3-81)||(11067588-11067667)
chr2 (1-83)||(29868154-29868237)
chr2 (3-84)||(14202223-14202304)
chr2 (3-68)||(36205480-36205545)
chr2 (1-83)||(39285120-39285202)
chr2 (3-64)||(45100042-45100103)
chr2 (1-84)||(36317812-36317896)
chr2 (3-64)||(4484147-4484208)
chr2 (3-64)||(4502952-4503013)
chr2 (1-84)||(42019684-42019766)
chr2 (36-83)||(26354130-26354176)
chr2 (1-83)||(17489958-17490041)
chr2 (1-84)||(2838231-2838314)
chr2 (1-41)||(12123434-12123474)
chr2 (16-64)||(30833649-30833697)
[»] chr1 (36 HSPs)
chr1 (1-83)||(833970-834052)
chr1 (3-85)||(8550582-8550664)
chr1 (3-84)||(49918638-49918719)
chr1 (1-84)||(23555070-23555153)
chr1 (5-84)||(31659528-31659607)
chr1 (4-83)||(45644158-45644237)
chr1 (3-84)||(10925510-10925591)
chr1 (3-84)||(40122000-40122081)
chr1 (1-85)||(50166978-50167062)
chr1 (3-84)||(37559663-37559745)
chr1 (3-85)||(44455448-44455530)
chr1 (3-84)||(3846920-3847001)
chr1 (1-81)||(13659153-13659233)
chr1 (3-85)||(28220024-28220107)
chr1 (3-84)||(20762956-20763038)
chr1 (3-84)||(28223220-28223302)
chr1 (3-83)||(196710-196790)
chr1 (3-79)||(3189632-3189708)
chr1 (3-79)||(3198449-3198525)
chr1 (3-79)||(3207288-3207364)
chr1 (3-83)||(28265359-28265439)
chr1 (19-83)||(37503362-37503426)
chr1 (1-83)||(13137780-13137863)
chr1 (1-83)||(1833794-1833876)
chr1 (1-84)||(41361196-41361279)
chr1 (1-83)||(927785-927865)
chr1 (1-84)||(16455902-16455985)
chr1 (3-66)||(50169032-50169095)
chr1 (1-82)||(30476247-30476329)
chr1 (3-55)||(3157153-3157205)
chr1 (3-68)||(13316167-13316232)
chr1 (1-84)||(4552447-4552531)
chr1 (37-84)||(19752985-19753033)
chr1 (49-83)||(37282498-37282532)
chr1 (1-81)||(15820582-15820659)
chr1 (1-57)||(36683895-36683951)
[»] chr7 (39 HSPs)
chr7 (3-85)||(41648812-41648894)
chr7 (3-82)||(48489719-48489798)
chr7 (3-84)||(23555329-23555411)
chr7 (4-84)||(36146211-36146291)
chr7 (1-83)||(19502464-19502547)
chr7 (3-84)||(18126934-18127016)
chr7 (1-83)||(23344251-23344332)
chr7 (3-85)||(27348105-27348187)
chr7 (3-68)||(29991341-29991406)
chr7 (3-83)||(35854204-35854285)
chr7 (3-83)||(47675936-47676017)
chr7 (3-83)||(8153625-8153705)
chr7 (1-84)||(14069632-14069716)
chr7 (1-84)||(14379660-14379744)
chr7 (3-83)||(25616143-25616223)
chr7 (3-83)||(38671025-38671105)
chr7 (4-83)||(24525306-24525385)
chr7 (1-83)||(26417602-26417685)
chr7 (1-70)||(495801-495870)
chr7 (3-64)||(4179061-4179122)
chr7 (3-83)||(31732768-31732849)
chr7 (3-83)||(41317238-41317319)
chr7 (3-79)||(43864532-43864609)
chr7 (3-83)||(48491864-48491944)
chr7 (1-83)||(1113938-1114021)
chr7 (1-83)||(31105200-31105282)
chr7 (3-85)||(47673742-47673825)
chr7 (3-84)||(4586449-4586531)
chr7 (1-86)||(23564868-23564951)
chr7 (3-64)||(25766776-25766837)
chr7 (29-84)||(6430441-6430497)
chr7 (1-83)||(30843286-30843367)
chr7 (3-80)||(12096969-12097045)
chr7 (3-64)||(48409095-48409156)
chr7 (29-84)||(4510338-4510394)
chr7 (29-84)||(4512180-4512236)
chr7 (1-83)||(30024562-30024639)
chr7 (29-81)||(2360774-2360827)
chr7 (24-84)||(3047062-3047120)
[»] chr5 (26 HSPs)
chr5 (3-85)||(5887233-5887315)
chr5 (4-85)||(31183262-31183343)
chr5 (2-84)||(534045-534128)
chr5 (3-84)||(30682721-30682803)
chr5 (1-81)||(538306-538387)
chr5 (3-83)||(33831966-33832046)
chr5 (4-84)||(3075548-3075629)
chr5 (3-83)||(39468348-39468429)
chr5 (3-83)||(8565748-8565828)
chr5 (3-83)||(16649635-16649715)
chr5 (3-85)||(42426033-42426116)
chr5 (3-69)||(42428244-42428311)
chr5 (3-84)||(30182876-30182958)
chr5 (1-82)||(13240037-13240118)
chr5 (1-83)||(28750455-28750538)
chr5 (11-83)||(19806658-19806729)
chr5 (3-67)||(25413048-25413112)
chr5 (3-66)||(16409767-16409830)
chr5 (29-83)||(40147555-40147610)
chr5 (1-84)||(42927178-42927261)
chr5 (16-81)||(32637124-32637190)
chr5 (3-65)||(36073861-36073923)
chr5 (3-83)||(13488488-13488569)
chr5 (3-66)||(13343348-13343411)
chr5 (1-66)||(37439427-37439494)
chr5 (11-83)||(6741665-6741734)
[»] chr6 (19 HSPs)
chr6 (1-83)||(26954091-26954173)
chr6 (1-83)||(28137211-28137293)
chr6 (3-85)||(5408867-5408950)
chr6 (3-85)||(5413192-5413275)
chr6 (4-81)||(3038729-3038806)
chr6 (3-84)||(16452126-16452208)
chr6 (3-61)||(5406025-5406083)
chr6 (3-61)||(5410350-5410408)
chr6 (3-57)||(9182857-9182911)
chr6 (3-83)||(16569307-16569389)
chr6 (20-84)||(14521477-14521541)
chr6 (31-83)||(22963508-22963561)
chr6 (31-83)||(23824832-23824885)
chr6 (29-84)||(602902-602958)
chr6 (1-65)||(33160169-33160233)
chr6 (3-65)||(31404493-31404555)
chr6 (3-68)||(2171342-2171407)
chr6 (3-68)||(30834349-30834414)
chr6 (19-84)||(257244-257308)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-81)||(148914-148994)
[»] scaffold0016 (1 HSPs)
scaffold0016 (3-66)||(114891-114955)
[»] scaffold1668 (1 HSPs)
scaffold1668 (3-83)||(1301-1382)
[»] scaffold0066 (1 HSPs)
scaffold0066 (3-84)||(20215-20295)
[»] scaffold0002 (1 HSPs)
scaffold0002 (3-85)||(434822-434905)
[»] scaffold0286 (1 HSPs)
scaffold0286 (3-68)||(11854-11919)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 30143628 - 30143708
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  30143628 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 30143708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 6599253 - 6599334
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  6599253 actttgatattggttactactttcctttgctctacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaa 6599334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 6674706 - 6674787
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  6674706 actttgatattggttactactttcctttgctctacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaa 6674787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41366500 - 41366420
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaa 81  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  41366500 ttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaa 41366420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 5689556 - 5689635
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  5689556 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtcggaattcacaaca 5689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 12702513 - 12702430
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  12702513 ttactttgatattggttactactttcctttgctccacacatcatagtttgtattgatgtgattttgagtccgaattcacaacaa 12702430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 18105958 - 18105875
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||| |||||| |||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  18105958 ttactttaatattggttactactttcctttgctctacacatcatagtttgtattagtgtgattttgagtctgaattcataacaa 18105875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 15213074 - 15213155
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  15213074 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 15213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 4731946 - 4732027
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||| | |||||||||| |||||||| ||||||||| |||| |||||||||||||||||||  |||||||||||||    
T  4731946 actttgatatcggttactactttcctttgctccacacatcattgtttgtattggtgtgattttgagttcgaattcacaacaa 4732027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 40321361 - 40321442
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| || ||||||| |||||||| ||| |||||||||| |||| ||||||||||||||| ||||||||||||    
T  40321361 ttactttgatattgattgctactttcctttgctccacatatcatagtttgtatt-gtgtgattttgagtcggaattcacaaca 40321442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 33352438 - 33352518
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||| ||| |||||| |||||||| ||| |||||| ||| |||||||||||||||||||  ||||||||||||    
T  33352438 actttgatattggttattactttcctttgctccacatatcataatttatattggtgtgattttgagtacgaattcacaaca 33352518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 1345258 - 1345176
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||||||| ||| || || |||| |||| |||||||||||| || ||||||||||||    
T  1345258 ttactttgatattggttactactttcctttgctccacagattattgtttgtatttgtgtgattttgaatccgaattcacaaca 1345176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8154066 - 8154147
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||| ||  ||||||||||| ||||||| ||||||||||||| | ||||||||||||    
T  8154066 ttactttgatattgattactactttcctttacttcacacatcatag-ttttattagtgtgattttgagcccgaattcacaaca 8154147  T

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Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 19945239 - 19945157
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaa 84  Q
    |||||| ||||| |||||||||| |||||||| |||||||| ||||| ||||||||||||||||||  | |||||||||||||    
T  19945239 actttgttattggttactactttcctttgctccacacatcaaagtttgtattggtgtgattttgagaccggaattcacaacaa 19945157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 34254211 - 34254149
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgatttt 65  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||| ||||    
T  34254211 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgttttt 34254149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 44304143 - 44304225
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaa 84  Q
    ||||| |||||| |||||||||| |||||||| |||||||||||| | ||||||||||||||||||  | |||||||||||||    
T  44304143 actttaatattggttactactttcctttgctccacacatcatagtatgtattggtgtgattttgagaacggaattcacaacaa 44304225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 1746099 - 1746015
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctg-aattcacaacaaag 86  Q
    |||||| ||||| |||||||||| |||| ||| |||||||||||||  |||||||||||||||||| | | ||||||||||||||    
T  1746099 actttgttattggttactactttcctttactccacacatcatagttcgtattggtgtgattttgagaccgaaattcacaacaaag 1746015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19491585 - 19491502
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||||| ||| |||||| |||||||| ||||||||||| ||||||||||  || ||||||||| |||||||||||||    
T  19491585 ttactttgatattgattaatactttcctttgctccacacatcatag-ttttattggttagagttttgagtccgaattcacaacaa 19491502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 3303549 - 3303474
Alignment:
Q  5 tttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcac 79  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||| |||||||||||  |||||||| ||||||||    
T  3303549 tttgatattggttaccactttcctttgctccacacatcatagtttgtattggtgtgagatttgagtccgaattcac 3303474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 4733996 - 4734075
Alignment:
Q  5 tttgatattgtttactacttttctttgctcgacacatcatagtttt-tattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||| |||||||||| |||||||| ||||||||| | ||| ||||||||| ||||||| || ||||||||||||    
T  4733996 tttgatattggttactactttcctttgctccacacatcattggtttgtattggtgtaattttgaatccgaattcacaaca 4734075  T

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Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4743110 - 4743027
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||| ||||| |||| ||||| |||||||| |||||| ||||||| |||||||||||  |||||||| ||||||||||||    
T  4743110 ttactttggtattggttaccactttcctttgctccacacattatagtttgtattggtgtgagatttgagtccgaattcacaaca 4743027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 17982941 - 17983023
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaaa 85  Q
    |||||| ||||| ||||||| || |||||||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||    
T  17982941 actttgttattggttactacgttcctttgctccacacatcatagtttgtattggtgtga-tttgagatcggaattcacaacaaa 17983023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 42498483 - 42498546
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttg 66  Q
    |||||||||||| || ||||||| |||||||| |||||||||| ||| ||||||||||||||||    
T  42498483 actttgatattggttgctactttcctttgctccacacatcatattttgtattggtgtgattttg 42498546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8965572 - 8965492
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| ||||||| || ||| |||| || |||||||||||| ||||||||||||||||||  ||||||||||||    
T  8965572 ttactttgatattggttactacgttcctt-gctccacgcatcatagtttt-attggtgtgattttgagttcgaattcacaaca 8965492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 34256387 - 34256325
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgatttt 65  Q
    ||||| |||||| |||||||||| |||||||| |||||||||||||| |||||||||| ||||    
T  34256387 actttaatattggttactactttcctttgctccacacatcatagtttgtattggtgtgttttt 34256325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 31218545 - 31218606
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattt 64  Q
    |||||| ||||| || ||||||| |||||||| |||||||||||||| ||||||||||||||    
T  31218545 actttgttattggttgctactttcctttgctccacacatcatagtttatattggtgtgattt 31218606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 43036708 - 43036792
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||| |||| |||||||||| |||||||| |||||||||  ||| ||||||||||| |||||||||  |||||| |||||    
T  43036708 ttactttgaaattggttactactttcctttgctccacacatcattttttgtattggtgtgagttttgagtccaaattcataacaa 43036792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 4162773 - 4162839
Alignment:
Q  23 ttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaagctat 90  Q
    ||||||||||||  |||||||| ||||| | |||| |||||||||||| |||||||||||||||||||    
T  4162773 ttttctttgctcctcacatcattgtttt-actggtatgattttgagtccgaattcacaacaaagctat 4162839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 27811566 - 27811631
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatc--atagtttttattggtgtgattttg 66  Q
    |||||||||||| |||||||||| |||| ||| |||||||  ||||||| ||||||||||||||||    
T  27811566 actttgatattggttactactttcctttcctccacacatcatatagtttgtattggtgtgattttg 27811631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1292351 - 1292318
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  1292351 ttactttgatattgtttactacttttctttgctc 1292318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 32902067 - 32901987
Alignment:
Q  4 ctttgatattgtttactacttttcttt-gctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    ||||||||||  ||||||||| ||||| |||| |||||||  |||||  |||||| |||||||||||| ||||||||||||||    
T  32902067 ctttgatattagttactacttctcttttgctccacacatctaagttt--attggtctgattttgagtccgaattcacaacaaa 32901987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 7493299 - 7493353
Alignment:
Q  27 ctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||| ||||||||||| ||||||||||||||||||  ||| |||||||||||||    
T  7493299 ctttgctccacacatcatag-ttttattggtgtgatttt--gtccgaattcacaacaa 7493353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 29796165 - 29796131
Alignment:
Q  49 tttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| ||||||||||||||||||||    
T  29796165 tttattggtgtgatgttgagtctgaattcacaaca 29796131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3073760 - 3073686
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattc 77  Q
    ||||||||||| || ||| |||||| |||||||| ||| || |||||||  ||||||||| ||||||||| ||||||    
T  3073760 ttactttgatactggttattactttcctttgctccacatatgatagttt--attggtgtgtttttgagtccgaattc 3073686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11711886 - 11711805
Alignment:
Q  1 ttactttgatattgtttactacttttcttt-gctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||| || ||| |||||||||| |||| |||| |||||||  |||||  |||||||| |||||||||| ||||||||||||    
T  11711886 ttacttttatcttggttactactttccttttgctccacacatctaagttt--attggtgtaattttgagtccgaattcacaaca 11711805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 22834889 - 22834806
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  22834889 ttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaa 22834806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 40734785 - 40734866
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||| | |||||||||||||    
T  40734785 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccgaattcacaacaa 40734866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 44700366 - 44700282
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||||| ||||||||||||||||||| |  ||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  44700366 ttactttgatattggttactacttttctttgctccatgcatcatagtttgtattggtgtgattttgagtccgaattcaaaacaaa 44700282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 9666349 - 9666270
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||||| |||||||||| |||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  9666349 ctttgatattggttactactttcctttgctccacagatcatagtttgtattggtgtgattttgagtccgaattcacaaca 9666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 27305599 - 27305519
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||  |||||||||||||||||||||| ||||||||||||    
T  27305599 ttactttgatattggttactactttcctttgctccacacatcatag--tttattggtgtgattttgagtccgaattcacaaca 27305519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 29813349 - 29813431
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  29813349 actttgatattagttactacttttctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 29813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 51399102 - 51399183
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||||||||||| ||||||| |||||||| | |||||||||||| ||||||| |||||||||||| |||||||||||||    
T  51399102 actttgatattgttttctactttcctttgctccatacatcatagtttgtattggtatgattttgagtccgaattcacaacaa 51399183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 761132 - 761214
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaag 86  Q
    |||||||| ||| |||||||||| |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  761132 actttgattttggttactactttcctttgctccacacatcatagtttgtattggtgtga-tttgagtccgaattcacaacaaag 761214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 2074960 - 2074883
Alignment:
Q  5 tttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  2074960 tttgatattggttactactttcctttgctccacacatcatag-ttttattggtgtgattttgggtccgaattcacaaca 2074883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 5236337 - 5236255
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||| | |||||||||| || | ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  5236337 actttgatatcgattactactttcctgtactccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaaa 5236255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 9636004 - 9635922
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||  | |||||||||||||    
T  9636004 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaacaa 9635922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 29196269 - 29196187
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaaa 85  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||  |||||||| ||||||||||||||    
T  29196269 ctttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagatttgagtccgaattcacaacaaa 29196187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 40735670 - 40735752
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||| |||||||||| |||||||| |||||||||| ||| |||||||||||||||||  | ||||||||||||||    
T  40735670 actttgatattggttactactttcctttgctccacacatcataatttgtattggtgtgattttgataccgaattcacaacaaa 40735752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 9581571 - 9581652
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagt-ctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||  |||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  9581571 actttgatattggttactactttcctttgcttcacacatcatagtttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 7762554 - 7762636
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagt-ctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||  |||||||| ||||||| |||||||    
T  7762554 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtagttttgagtcctgaattgacaacaa 7762636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39153247 - 39153163
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||| |||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||| | |||||| ||||||    
T  39153247 ttactttgaaattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagcccgaattctcaacaa 39153163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 51352022 - 51351939
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||||| |||| ||||| |||||||| ||||||| |||| || |||| |||||||||||||| ||||||||||||||    
T  51352022 ttactttgatattggttaccactttcctttgctccacacatcgtagtatt-attgatgtgattttgagtccgaattcacaacaaa 51351939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31314726 - 31314809
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||| |||||  ||| |||||| |||||||| | |||||||||||| |||||||||||||||||||| | |||||||||||    
T  31314726 ttactttaatattagttattactttcctttgctccatacatcatagtttgtattggtgtgattttgagtcggtattcacaacaa 31314809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 45095451 - 45095514
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttg 66  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||| ||||||||||    
T  45095451 actttgatattggttactactttcctttgctctacacatcatagtttgtattgatgtgattttg 45095514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 19683768 - 19683686
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| | |||||||||||| ||||||||||| ||||||  | |||||||||||||    
T  19683768 actttgatattggttactactttcctttgctccaaacatcatagtttgtattggtgtgagtttgagaccggaattcacaacaa 19683686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 9634701 - 9634637
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag 68  Q
    |||||||||||| |||||||||| |||||||| ||| |||||||||| ||||||||||||||||||    
T  9634701 actttgatattggttactactttcctttgctccaca-atcatagtttgtattggtgtgattttgag 9634637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16499300 - 16499369
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtc 70  Q
    |||||||||| ||| |||||||||| |||||||| |||||| ||||||| ||||| ||||||||||||||    
T  16499300 ttactttgatgttggttactactttcctttgctccacacattatagtttgtattgatgtgattttgagtc 16499369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 37406981 - 37407058
Alignment:
Q  7 tgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||| |||||||||| |||||||| |||||||||| ||| || |||||||| |||||| | |||||||||||||    
T  37406981 tgatattggttactactttcctttgctccacacatcatattttgtagtggtgtgactttgaggccgaattcacaacaa 37407058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 32891376 - 32891459
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||| |||||| |||||||||| |||||||| ||||||||||| ||| |||||||||| ||||||||| ||| |||||||||    
T  32891376 ttactttaatattggttactactttcctttgctccacacatcatag-tttcattggtgtgagttttgagtccgaagtcacaacaa 32891459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 37408747 - 37408827
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||| |||||| |||||||||| |||||||| |||||||||| ||| ||||| ||||| |||||| | ||||||||||||    
T  37408747 actttaatattggttactactttcctttgctccacacatcatattttgtattgatgtgactttgaggccgaattcacaaca 37408827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 29682644 - 29682726
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga--ttttgagtctgaattcacaaca 83  Q
    ||||| || ||| |||||||||| |||||||| |||||||||||||| |||||||||||  ||||| ||| ||||||||||||    
T  29682644 actttaattttgattactactttcctttgctccacacatcatagtttgtattggtgtgattttttgtgtcggaattcacaaca 29682726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 5258024 - 5257942
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaa 84  Q
    |||||| ||||| |||||||||| |||||||| |||||||||||||  ||||||||||| ||||||  | |||||||||||||    
T  5258024 actttgttattggttactactttcctttgctccacacatcatagttcgtattggtgtgactttgagaccggaattcacaacaa 5257942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 23391793 - 23391711
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||| ||| |||||| |||| ||| |||||||||||||| ||||||||||| ||||| ||  |||||||||||||    
T  23391793 actttgatattggttattactttccttttctccacacatcatagtttgtattggtgtgagttttgtgttcgaattcacaacaa 23391711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 7764753 - 7764834
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagt-ctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||| ||  |||||||||||||| |||||||||  |||||||| | ||||||||||||    
T  7764753 actttgatattggttactactttcctttacttcacacatcatagtttgtattggtgtagttttgagtccggaattcacaaca 7764834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 29811157 - 29811238
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||| |||| |||||||||| |||||||| ||| |||||| ||| ||||||||||| ||||||||  |||||||||||||    
T  29811157 ctttgaaattggttactactttcctttgctccacaaatcatattttgtattggtgtgagttttgagttcgaattcacaacaa 29811238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 5260203 - 5260121
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaa 84  Q
    |||||| ||||| |||||||||| |||||||| |||||||||||||  ||||||| ||| ||||||  | |||||||||||||    
T  5260203 actttgttattggttactactttcctttgctccacacatcatagttcgtattggtttgactttgagaccagaattcacaacaa 5260121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 23410212 - 23410130
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||||   |||||||||| ||||| || |||||||||||||| ||||| ||||| ||||| ||| |||||||||||||    
T  23410212 actttgatatatgttactactttcctttgatccacacatcatagtttgtattgatgtgagttttgtgtccgaattcacaacaa 23410130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 4160105 - 4160058
Alignment:
Q  38 acatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  4160105 acatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 4160058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 21350893 - 21350811
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||||||  ||||||| |   ||| |||||||||| ||||||||| ||||||||||||    
T  21350893 ttactttgatattggttactactttcctttgcttcacacatc-tttatttcattggtgtgagttttgagtccgaattcacaaca 21350811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 47304575 - 47304629
Alignment:
Q  29 ttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||| |||||||||||||| ||||| ||||||||| |||| ||||||| ||||    
T  47304575 ttgctccacacatcatagtttgtattgttgtgattttaagtccgaattcagaaca 47304629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 53921365 - 53921333
Alignment:
Q  50 ttattggtgtgattttgagtctgaattcacaac 82  Q
    |||||||||||||||||| ||||||||||||||    
T  53921365 ttattggtgtgattttgaatctgaattcacaac 53921333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 48893525 - 48893443
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  48893525 ttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 45687066 - 45686985
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    ||||||||||| |||||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  45687066 ctttgatattggttactactttcctttgctccatacatcatagtttgtattggtgtgattttgagtctgaattcacaacaaa 45686985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 56178516 - 56178438
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaa 81  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||    
T  56178516 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaa 56178438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 52082543 - 52082461
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||| |||||||||| ||||| || |||||||||| ||| |||||||||||||||||||| ||||||||||||||    
T  52082543 actttgatattggttactactttcctttgttccacacatcataatttgtattggtgtgattttgagtccgaattcacaacaaa 52082461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 48143336 - 48143417
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagt-ctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  48143336 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 52095242 - 52095161
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| ||||| || |||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  52095242 actttgatattgattactactttcctttgttccacacgtcatagtttgtattggtgtgattttgagtccgaattcacaacaa 52095161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26175519 - 26175436
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    ||||||||| |||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  26175519 ttactttgaaattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 29999709 - 29999626
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaaa 85  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||  | ||||||||||||||    
T  29999709 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaacaaa 29999626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 34570292 - 34570213
Alignment:
Q  5 tttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||| || |||||| ||||||    
T  34570292 tttgatattggttactactttcctttgctccacacatcatagtttatattggtgtgattttgaatccgaattcgcaacaa 34570213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 47038298 - 47038219
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcaca 80  Q
    |||||||||||||| |||||||||| ||||| || |||||||||||||| ||||||||||||||||||||  ||||||||    
T  47038298 ttactttgatattggttactactttcctttgttccacacatcatagtttgtattggtgtgattttgagtccaaattcaca 47038219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36463278 - 36463196
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| ||| |||||| |||| ||| |||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  36463278 ttactttgatattggttattactttcctttactccacacatcatagtttgtattagtgtgattttgagtccgaattcacaaca 36463196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9927341 - 9927257
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||||| | |||||||| |||||||| |||||||||||||| |||||||| || ||||||||| |||||||||||||    
T  9927341 ttactttgatattggtaactactttcctttgctccacacatcatagtttatattggtgcgagttttgagtccgaattcacaacaa 9927257  T

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Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 12743811 - 12743727
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||| |||| |||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||| |||||||||||||    
T  12743811 ttactttgaaattggttactactttcctttgctccacacaacatagtttgtattggtgtgagttttgagtccgaattcacaacaa 12743727  T

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Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 54199788 - 54199708
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||| || |||||||||| |||||||| | ||||||| |||| |||||||||||||||||||| ||||||||||||    
T  54199788 actttgatactggttactactttcctttgctccatacatcatcgtttgtattggtgtgattttgagtccgaattcacaaca 54199708  T

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Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 5369962 - 5369879
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaaa 85  Q
    |||||||||||| |||||||||| |||| ||| |||||||||||||| ||||||||||||||||||  | ||||||||||||||    
T  5369962 actttgatattgattactactttcctttactccacacatcatagtttgtattggtgtgattttgagaccggaattcacaacaaa 5369879  T

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Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 5872105 - 5872184
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||  ||||| |||||||||||||||||||| | |||||||||||    
T  5872105 actttgatattggttactactttcctttgctccacacatc--agtttgtattggtgtgattttgagtccggattcacaacaa 5872184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 46147276 - 46147194
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||||  |||||||||| ||||||| | |||||||||||||    
T  46147276 actttgatattggttactactttcctttgctccacacatcatagtttgcattggtgtgagttttgaggcggaattcacaacaa 46147194  T

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Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 37740913 - 37740994
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||| ||||| ||||||    
T  37740913 actttgatattgattactactttcctgtgctccacacatcatagtttgtattggtgtgagttttgagtccgaatttacaaca 37740994  T

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Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 52467240 - 52467159
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaa 81  Q
    |||||||||||||| |||| ||||| |||||||  |||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  52467240 ttactttgatattggttaccactttcctttgcttcacacatcatagtttgtattggtgtgagttttgagtccgaattcacaa 52467159  T

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Target: chr4; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 12739436 - 12739352
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||| |||| ||||||||||  ||| ||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  12739436 ttactttgaaattggttactactttcttttactccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 12739352  T

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Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 5207732 - 5207650
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||||||||   |||||||||| |||||||| ||||| |||| ||| |||||||||||||||||||||| ||| |||||||    
T  5207732 ttactttgatatcaattactactttcctttgctccacacaccata-tttatattggtgtgattttgagtctgcattaacaacaa 5207650  T

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Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 31474432 - 31474512
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| ||||||||||  ||||||  ||||||||| |||| |||||||||||  ||||||| ||||||||||||    
T  31474432 ttactttgatattgattactactttcatttgctacacacatcattgtttgtattggtgtga--ttgagtccgaattcacaaca 31474512  T

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Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 29254781 - 29254861
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaaca 83  Q
    ||||| |||||| |||||||||| |||||||| |||||||||||||| |||| |||||||||| || || ||||||||||||    
T  29254781 actttaatattggttactacttt-ctttgctccacacatcatagtttgtattagtgtgattttaagttccgaattcacaaca 29254861  T

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Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 37229610 - 37229531
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaa 81  Q
    |||||||||||||| |||||||||  | |||||| ||||| ||||| |||||||||| | |||||||||| ||||||||||    
T  37229610 ttactttgatattggttactacttcccattgctccacacaacatag-ttttattggttttattttgagtccgaattcacaa 37229531  T

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Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 50262542 - 50262486
Alignment:
Q  29 ttgctcgacacatcatagtttttattggtgtg-attttgagtctgaattcacaacaa 84  Q
    |||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  50262542 ttgctccacacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacaa 50262486  T

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Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 24969953 - 24970031
Alignment:
Q  5 tttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||| |||||||||| |||||||| ||||||| | ||||| ||  ||||||||||||||  |||||||||||||    
T  24969953 tttgatattggttactactttcctttgctc-acacatctttgttttcatcagtgtgattttgagttcgaattcacaacaa 24970031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 4588240 - 4588321
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga--ttttgagtctgaattcacaacaa 84  Q
    |||||||| || |||||| ||| |||||||| |||||||| ||| || ||||||||||  ||||||||| |||||||||||||    
T  4588240 ctttgatagtggttactattttcctttgctccacacatcaaagtatt-attggtgtgagtttttgagtccgaattcacaacaa 4588321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 13992171 - 13992112
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgat 62  Q
    |||||| ||||| |||||||||| |||||||| |||||||||| ||  ||||||||||||    
T  13992171 actttgttattggttactactttcctttgctccacacatcatatttcgtattggtgtgat 13992112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 36994851 - 36994898
Alignment:
Q  37 cacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  36994851 cacatcatagtttgtattggtgtgagttttgagtcagaattcacaaca 36994898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 41639746 - 41639801
Alignment:
Q  29 ttgctcgacacatcatagtttttattggtgtg-attttgagtctgaattcacaaca 83  Q
    |||||| |||||||||||||| ||||| |||| | |||||||||||||||||||||    
T  41639746 ttgctccacacatcatagtttgtattgatgtgaaatttgagtctgaattcacaaca 41639801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 34139653 - 34139571
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  34139653 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaaa 34139571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 723627 - 723546
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  723627 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaa 723546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36987957 - 36987874
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||||| |||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  36987957 ttactttgaaattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaa 36987874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2334300 - 2334218
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||| |||| |||||||||| |||||||  |||||||||||||| |||||||||||||||||||||||||||||||||    
T  2334300 ttactttgaaattggttactactttcctttgcttcacacatcatagtttgtattggtgtgattttgagtctgaattcacaaca 2334218  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 14633708 - 14633627
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||  |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  14633708 actttgatattggttactactttcctttgcttcacacatcatagtttgtattggtgtgattttgagtctgaaatcacaacaa 14633627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 17057249 - 17057168
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  17057249 actttgatattggttactactttcctttgctctacacatcatattttgtattggtgtgattttgagtccgaattcacaacaa 17057168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 17085232 - 17085151
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  17085232 actttgatattggttactactttcctttgctctacacatcatattttgtattggtgtgattttgagtccgaattcacaacaa 17085151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 6594884 - 6594804
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||  |||||||||||    
T  6594884 actttgatattggttactactttactttgctccacacatcatagtttgtattggtgtgattttgagtccaaattcacaaca 6594804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 42362633 - 42362713
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||| ||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  42362633 actttgattttggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 33162333 - 33162254
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  33162333 ctttgatattggttactactttcctttgctccacacatcatagtttgtattgatgtgattttgagtccgaattcacaaca 33162254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 24885873 - 24885953
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||| ||| |||||||  |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  24885873 actttgatattggttactattttcctttgctacacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 24885953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 36773847 - 36773926
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||    
T  36773847 ctttgatattggttactactttcatttgctccacacatcatagtttgtattggtgtgattttgaatccgaattcacaaca 36773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 38312528 - 38312608
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| ||||||||| |||| |||||||||||||||||||| ||| |||||||||    
T  38312528 actttgatattggttactactttcctttgctccacacatcattgtttatattggtgtgattttgagtccgaa-tcacaacaa 38312608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 11690778 - 11690857
Alignment:
Q  6 ttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||  |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  11690778 ttgatattagttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 11690857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 5723136 - 5723074
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgatttt 65  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||    
T  5723136 actttgatattggttactactttactttgctccacacatcatagtttgtattggtgtgatttt 5723074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 11151476 - 11151395
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||| ||| ||||||||  ||||||||||||    
T  11151476 actttgatattgattactacttttatttgctccacacatcatagtttgtattggtatgagttttgagttcgaattcacaaca 11151395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 11049831 - 11049914
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||||| ||||||||||  ||||||| || |||||||| ||||||||||||||||||| ||| ||| ||||||||||    
T  11049831 ttactttgatattggttactactttcttttgctccacgcatcatag-ttttattggtgtgattttgcgtccgaactcacaacaaa 11049914  T

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Target: chr2; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 13122049 - 13122124
Alignment:
Q  5 tttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaa 81  Q
    |||||||||| ||| ||||||||||| ||| ||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  13122049 tttgatattgattagtacttttctttactccacacatcatag-ttttattggtgtgattttgtgtccgaattcacaa 13122124  T

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Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 11067588 - 11067667
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagttttta-ttggtgtgattttgagtctgaattcacaa 81  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||||  | ||||||| |||||||| ||||||||||||    
T  11067588 actttgatattggttactactttcctttgctccacacatcatagtttgaatttggtgtaattttgaggctgaattcacaa 11067667  T

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Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29868154 - 29868237
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtg-attttgagtctgaattcacaaca 83  Q
    ||||||| | |||| ||||||||||||||||||| |||||||||||||| ||||| |||| | |||||||| ||||||||||||    
T  29868154 ttactttaaaattgattactacttttctttgctccacacatcatagtttgtattgctgtgaaatttgagtccgaattcacaaca 29868237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 14202304 - 14202223
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||| ||| ||| |||||||||| | ||||| ||||||||| || |||||||||||||    
T  14202304 actttgatattgattactactttcctttactccacatatcatagtttgtgttggtatgattttgactccgaattcacaacaa 14202223  T

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Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 36205545 - 36205480
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag 68  Q
    |||||| ||||| |||||||||| |||||||| |||||||||||||| |||| |||||||||||||    
T  36205545 actttgttattggttactactttcctttgctccacacatcatagtttgtattagtgtgattttgag 36205480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39285120 - 39285202
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||| || ||||||| ||| |||| |||| ||||||||||||    
T  39285120 ttactttgaaattggttactacttttctttgctccacacatcatag-ttgtattggtatgagttttaagtccgaattcacaaca 39285202  T

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Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 45100042 - 45100103
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattt 64  Q
    |||||||||||| |||||||||| |||||||| |||||||||| ||  ||||||||||||||    
T  45100042 actttgatattggttactactttcctttgctccacacatcataattcgtattggtgtgattt 45100103  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36317896 - 36317812
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||| |||| ||||||||||  |||| || ||||||||| |||| ||||||||||| |||||||||  ||||||||||||    
T  36317896 ttactttgaaattggttactactttcatttgttctacacatcattgtttgtattggtgtgagttttgagtccaaattcacaacaa 36317812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 4484208 - 4484147
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattt 64  Q
    |||||| ||||| |||||||||| |||||||| |||||||||| ||  ||||||||||||||    
T  4484208 actttgttattggttactactttcctttgctccacacatcatatttcgtattggtgtgattt 4484147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 4503013 - 4502952
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattt 64  Q
    |||||| ||||| |||||||||| |||| ||| |||||| ||||||| ||||||||||||||    
T  4503013 actttgttattggttactactttcctttactccacacattatagtttgtattggtgtgattt 4502952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 42019766 - 42019684
Alignment:
Q  1 ttactttgatattgtttactacttttcttt-gctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||||| || |||||| | ||| ||||||||||||   |||   |||||||||||||||||||||||||||||||||    
T  42019766 ttactttgatattgattgctacttctattttgctcgacacatctacgttc--attggtgtgattttgagtctgaattcacaacaa 42019684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 26354130 - 26354176
Alignment:
Q  36 acacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  26354130 acacatcatagtttt-attggtgtgattttgagtccgaattcataaca 26354176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17490041 - 17489958
Alignment:
Q  1 ttactttgatattgtttactacttttct-ttgctcgacaca--tcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||| |||||| |||||| |||||  |||||||||| |||||||  |||||||||| ||||||||||||    
T  17490041 ttactttgatattggttacta-ttttctcttgctccacacacatcatagtttt-attggtgcaattttgagtccgaattcacaaca 17489958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2838231 - 2838314
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||||| || |||||||||| |||| ||| |||||||| || | |||||||||||| ||||| ||| ||| |||||||||    
T  2838231 ttactttgatagtggttactactttcctttactccacacatcaaag-tattattggtgtgagttttgtgtccgaactcacaacaa 2838314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12123474 - 12123434
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacat 41  Q
    |||||||||||||| |||||||||| |||||||| ||||||    
T  12123474 ttactttgatattggttactactttcctttgctccacacat 12123434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 30833649 - 30833697
Alignment:
Q  16 ttactacttttctttgctcgacacatcatagtttttattggtgtgattt 64  Q
    |||||||||| |||||||| |||||||||| ||  ||||||||||||||    
T  30833649 ttactactttcctttgctccacacatcatatttcgtattggtgtgattt 30833697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 834052 - 833970
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  834052 ttactttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 8550664 - 8550582
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  8550664 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaaa 8550582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 49918638 - 49918719
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  49918638 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtctgaatttacaacaa 49918719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23555153 - 23555070
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||| |||||||||||||    
T  23555153 ttactttgacattgattactacttttctttgctccacacatcattgtttctattggtgcgattttgagtccgaattcacaacaa 23555070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 31659528 - 31659607
Alignment:
Q  5 tttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||| ||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  31659528 tttgatattggttactacttttcttttctccacacatcatattttatattggtgtgattttgagtccgaattcacaacaa 31659607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 45644237 - 45644158
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  45644237 ctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtgattttgagtccgaattcacaaca 45644158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 10925510 - 10925591
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||||    
T  10925510 actttgatattgattactactttcctttgctccacacaacatagtttgtattgttgtgattttgagtccgaattcacaacaa 10925591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 40122081 - 40122000
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||| ||||||| |||||||||| |||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||    
T  40122081 acttagatattggttactactttcctttgctccacgcatcatagtttgtattggtgtgattttgagtccgaattcacaacaa 40122000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 50167062 - 50166978
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||| | |||||||||||||||||  || |||||||||||    
T  50167062 ttactttgatattggttactactttcctttgctccacacatcatagtttgttttggtgtgattttgagttcgagttcacaacaaa 50166978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 37559745 - 37559663
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| | |||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  37559745 actttgatattggttactactttcctttgctccagacatcatagtttatattggtgtgagttttgagtccgaattcacaacaa 37559663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 44455448 - 44455530
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||| |||| |||||||||| ||| ||| |||||||||| |||||||||||||||||||  ||||||||||||||    
T  44455448 actttgatattggttaccacttttcttttctccacatatcatagtttgtattggtgtgattttgagtacgaattcacaacaaa 44455530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 3847001 - 3846920
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||| ||| |||||||||||||| |||| || |||||||||||| |||||||||||||    
T  3847001 actttgatattggttactactttcctttactccacacatcatagtttgtattagtatgattttgagtccgaattcacaacaa 3846920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 13659233 - 13659153
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaa 81  Q
    |||||||||| ||| |||||||||| |||||||| |||||| ||||||| ||||| |||||||||||||| ||||||||||    
T  13659233 ttactttgatgttggttactactttcctttgctccacacattatagtttgtattgatgtgattttgagtccgaattcacaa 13659153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 28220107 - 28220024
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaaa 85  Q
    ||||| |||||| |||||| ||||||||| || |||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  28220107 actttaatattggttactaattttctttgttccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaaa 28220024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 20762956 - 20763038
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaa 84  Q
    |||||||||||| ||| |||||| |||||||| |||||||||||||| ||||||||||||||||||  | |||||||||||||    
T  20762956 actttgatattggttaatactttcctttgctccacacatcatagtttgtattggtgtgattttgagaccggaattcacaacaa 20763038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 28223302 - 28223220
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||| ||| ||||||||| |||||||||||||    
T  28223302 actttgatattggttactactttcgtttgctccacacatcatagtttgtattggtctgagttttgagtccgaattcacaacaa 28223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 196790 - 196710
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||| ||| |||||||| |||||||||| ||| ||||||||||| |||||||  ||||||||||||    
T  196790 actttgatattggttactattttcctttgctccacacatcataatttgtattggtgtgaatttgagtacgaattcacaaca 196710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 3189632 - 3189708
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcac 79  Q
    ||||||| |||| |||||||||| |||||||| | |||||||||||| |||||||||||||||| ||| ||||||||    
T  3189632 actttgaaattggttactactttcctttgctccagacatcatagtttatattggtgtgattttgtgtccgaattcac 3189708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 3198449 - 3198525
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcac 79  Q
    ||||||| |||| |||||||||| |||||||| | |||||||||||| |||||||||||||||| ||| ||||||||    
T  3198449 actttgaaattggttactactttcctttgctccagacatcatagtttatattggtgtgattttgtgtccgaattcac 3198525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 3207288 - 3207364
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcac 79  Q
    ||||||| |||| |||||||||| |||||||| | |||||||||||| |||||||||||||||| ||| ||||||||    
T  3207288 actttgaaattggttactactttcctttgctccagacatcatagtttatattggtgtgattttgtgtccgaattcac 3207364  T

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Target: chr1; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 28265439 - 28265359
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||||||  ||||| ||| |||| ||| |||||||||||||| |||||||||||||||||||| |||||| |||||    
T  28265439 actttgatattggctactattttcctttactccacacatcatagtttgtattggtgtgattttgagtccgaattcccaaca 28265359  T

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Target: chr1; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 37503426 - 37503362
Alignment:
Q  19 ctacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||| |||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  37503426 ctactttcctttactccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 37503362  T

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Target: chr1; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13137863 - 13137780
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    ||||||||| |||| |||||||||| |||||||| |||||||||| ||| ||||||||||| ||||||||| ||||| ||||||    
T  13137863 ttactttgaaattggttactactttcctttgctccacacatcataatttgtattggtgtgagttttgagtccgaatttacaaca 13137780  T

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Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1833794 - 1833876
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||| |||| |||| ||||| |||| ||| ||| |||||||||| |||||||||||| ||||||| ||||||||||||    
T  1833794 ttactttgaaattggttacgactttcctttactccacagatcatagtttgtattggtgtgatattgagtccgaattcacaaca 1833876  T

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Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 41361196 - 41361279
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||||| ||| |||||| |||||||| ||||||||||| ||||||||||  || ||||||||| |||||||||||||    
T  41361196 ttactttgatattgattaatactttcctttgctccacacatcatag-ttttattggttagagttttgagtccgaattcacaacaa 41361279  T

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Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 927865 - 927785
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||| ||||  |||| ||| ||||||||||||||  |||| |||||||||||||| ||||||||||||    
T  927865 ttactttgatattggttaccacttccctttactccacacatcatagttt--attgatgtgattttgagtccgaattcacaaca 927785  T

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Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 16455902 - 16455985
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||||| ||||||||||  ||||||  ||| ||| | ||||| |||||||| |||||||||| |||||||||||||    
T  16455902 ttactttgatattggttactactttcatttgctacacaaatctttgttttcattggtgtaattttgagtccgaattcacaacaa 16455985  T

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Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 50169095 - 50169032
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttg 66  Q
    |||||||||||| ||||||||||  ||||||  |||||||||||||| ||||||||||||||||    
T  50169095 actttgatattggttactactttcatttgcttcacacatcatagtttgtattggtgtgattttg 50169032  T

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Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 30476329 - 30476247
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaac 82  Q
    ||||||||| |||| |||||||||| |||| ||| |||||| ||||||| ||||||||||| ||||||||  |||||||||||    
T  30476329 ttactttgaaattggttactactttcctttactccacacattatagtttgtattggtgtgagttttgagttcgaattcacaac 30476247  T

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Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 3157153 - 3157205
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattg 55  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||    
T  3157153 actttgatattggttactactttcctttgctccacacatcatagtttgtattg 3157205  T

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Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 13316232 - 13316167
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag 68  Q
    |||||| ||||| |||||||||| |||||||| |||||| ||| ||  ||||||||||||||||||    
T  13316232 actttgttattgattactactttcctttgctccacacattatatttcgtattggtgtgattttgag 13316167  T

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Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4552531 - 4552447
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtg-attttgagtctgaattcacaacaa 84  Q
    ||||||||| |||| |||||||||| |||| ||  || ||||||||||| |||||||||| | |||||||| |||||| ||||||    
T  4552531 ttactttgaaattggttactactttcctttacttcacgcatcatagtttgtattggtgtgaaatttgagtccgaattcgcaacaa 4552447  T

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Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 19752985 - 19753033
Alignment:
Q  37 cacatcatagtttttattggtgtgat-tttgagtctgaattcacaacaa 84  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  19752985 cacatcatagtttgtattggtgtgaaatttgagtctgaattcacaacaa 19753033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 37282532 - 37282498
Alignment:
Q  49 tttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||||||||||| ||||||||||||    
T  37282532 tttattggtgtgattttgagtccgaattcacaaca 37282498  T

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Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 15820582 - 15820659
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaa 81  Q
    |||||||||||||  |||||||||| |||||||| |||||||  ||  |||||||||| | ||||||||| ||||||||||    
T  15820582 ttactttgatattagttactactttcctttgctccacacatctaag--tttattggtgag-ttttgagtccgaattcacaa 15820659  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36683895 - 36683951
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggt 57  Q
    |||||||||||||| |||| ||||| |||||||| ||||||  | ||||||||||||    
T  36683895 ttactttgatattggttaccactttcctttgctccacacatgtttgtttttattggt 36683951  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 41648894 - 41648812
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||  |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  41648894 actttgatattagttactactttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaaa 41648812  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 48489719 - 48489798
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaac 82  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||  |||||||||||||||||||| |||||||||||    
T  48489719 actttgatattggttactactttcctttgctccacacatcatagttggtattggtgtgattttgagtccgaattcacaac 48489798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 23555329 - 23555411
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  23555329 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 23555411  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 36146291 - 36146211
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||| |||| |||| |||||||||| |||||||||||||    
T  36146291 ctttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtaattttgagtccgaattcacaacaa 36146211  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 19502464 - 19502547
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    ||||||||| |||| |||||||||| |||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  19502464 ttactttgaaattggttactactttcctttgctccacacatcatagtttgtattagtgtgagttttgagtctgaattcacaaca 19502547  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 18126934 - 18127016
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||| ||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  18126934 actttgatattgattactactttcctttactccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 18127016  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 23344251 - 23344332
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||| ||||||| |||||||||| |||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  23344251 ttacttggatattggttactactttcctttgctccacacatcatag-ttttattgatgtgattttgggtctgaattcacaaca 23344332  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 27348105 - 27348187
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||| || ||||||| |||||||| |||||||||| ||| |||| ||||||||||||||| ||||||||||||||    
T  27348105 actttgatattggttgctactttcctttgctccacacatcataatttgtatttgtgtgattttgagtccgaattcacaacaaa 27348187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 29991341 - 29991406
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag 68  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  29991341 actttgatattggttactacttttctttgctccacacatcatagtttgtattggtgtgactttgag 29991406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 35854204 - 35854285
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtct-gaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||| ||||||||||||| || ||||||||||||    
T  35854204 actttgatattggttactactttcctttgctccacacatcatagtttgtatttgtgtgattttgagactggaattcacaaca 35854285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 47676017 - 47675936
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||| ||||||||||||    
T  47676017 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgtgtccgaattcacaaca 47675936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 8153625 - 8153705
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| || ||||||||||| |||| ||||||||||||||| |||||| |||||    
T  8153625 actttgatattgattactactttcctttgctccacgcatcatagtttgtattagtgtgattttgagtccgaattcccaaca 8153705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 14069716 - 14069632
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||| |||  |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  14069716 ttactttgaaattagttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 14069632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 14379744 - 14379660
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||| |||  |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  14379744 ttactttgaaattagttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 14379660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 25616143 - 25616223
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| | |||||||||||| |||||||||||||||||||  | ||||||||||    
T  25616143 actttgatattggttactactttcctttgctccatacatcatagtttgtattggtgtgattttgagtacgtattcacaaca 25616223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 38671105 - 38671025
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||| ||  |||||| ||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  38671105 actttgatttttgttactattttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 24525385 - 24525306
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||||| ||||||||||||||||||  ||| |||||||||| ||||| ||||||||||| | |||||||||||||    
T  24525385 ctttgatattgattactacttttctttgctacacatatcatagtttgtattgatgtgattttgaatttgaattcacaaca 24525306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26417602 - 26417685
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||| ||| ||| |||||||||| ||||||||||| ||||||||| ||||||||||||    
T  26417602 ttactttgatattggttactactttcctttactccacatatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 26417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 495870 - 495801
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtc 70  Q
    |||||||||||||| |||||||||| |||||||| ||| |||||| ||| |||| |||||||||||||||    
T  495870 ttactttgatattggttactactttcctttgctccacatatcataatttgtattagtgtgattttgagtc 495801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 4179061 - 4179122
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattt 64  Q
    |||||| ||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  4179061 actttgttattggttactactttcctttgctccacacatcatagtttgtattggtgtgattt 4179122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 31732849 - 31732768
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    ||||||| |||| ||||||||||  ||||||| |||||||||||||| || |||||||| ||||||||| ||||||||||||    
T  31732849 actttgaaattggttactactttcatttgctccacacatcatagtttgtactggtgtgagttttgagtccgaattcacaaca 31732768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 41317319 - 41317238
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| | |||||||||||| |||||||||||  |||||||  ||||||||||||    
T  41317319 actttgatattggttactactttcctttgctccaaacatcatagtttgtattggtgtgagatttgagttcgaattcacaaca 41317238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 43864532 - 43864609
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcac 79  Q
    |||||||||||| |||| ||||| |||| ||| |||||||||||||| ||||||||||| ||||||||| ||||||||    
T  43864532 actttgatattgattaccactttcctttactccacacatcatagtttgtattggtgtgagttttgagtccgaattcac 43864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 48491864 - 48491944
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||| |||  ||||| ||||||  ||||||||||||||||| || ||||||||||||    
T  48491864 actttgatattggttactactttcctttactccgcacattatagttggtattggtgtgattttgaatccgaattcacaaca 48491944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1113938 - 1114021
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||||  |||| ||||| |||||||| |||||||||||||| ||||| ||||| |||||| || ||||||||||||    
T  1113938 ttactttgatattagttaccactttcctttgctccacacatcatagtttgtattgatgtgagttttgattcggaattcacaaca 1114021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 31105282 - 31105200
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||| ||| ||||||||||| |||||||||||||| ||||| ||  ||||||||||||    
T  31105282 ttactttgatattgattactactttcctttactccacacatcatag-ttttattggtgtgagttttgtgttcgaattcacaaca 31105200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 47673825 - 47673742
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaaa 85  Q
    |||||||||||| ||||||||||  |||| || |||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||    
T  47673825 actttgatattggttactactttcttttgttccacacatcatagtttgtattggtgtgagttttgtgtccgaattcataacaaa 47673742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 4586449 - 4586531
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||| |||| |||| ||||| |||||||| ||||||||||||||  ||||||||||  |||||||| |||||||||||||    
T  4586449 actttgaaattggttaccactttcctttgctccacacatcatagtttacattggtgtgagatttgagtccgaattcacaacaa 4586531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23564951 - 23564868
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaag 86  Q
    |||||||||||||| | ||||||||||||  ||| ||||||| || | |||||| ||||||||||||||||||||||||| |||||    
T  23564951 ttactttgatattggtcactacttttcttcactccacacatc-ta-tgtttattagtgtgattttgagtctgaattcacatcaaag 23564868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 25766837 - 25766776
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattt 64  Q
    |||||| ||||| ||||||||||||||||||| |||||||||| ||  ||||||||||||||    
T  25766837 actttgttattggttactacttttctttgctccacacatcatatttcgtattggtgtgattt 25766776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 6430441 - 6430497
Alignment:
Q  29 ttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  6430441 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 6430497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30843367 - 30843286
Alignment:
Q  1 ttactttgatattgtttactacttttcttt-gctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||| |||| |||| ||  |||||  |||||||||||||||| |||||||||||||||    
T  30843367 ttactttgatattggttactactttccttttgctccacacttctaagttt--attggtgtgattttgattctgaattcacaaca 30843286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 12097045 - 12096969
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcaca 80  Q
    |||||||||||| |||||||||| ||||  || |  ||||||||||| ||| |||||||||||||||| |||||||||    
T  12097045 actttgatattggttactactttcctttattccaagcatcatagtttatat-ggtgtgattttgagtccgaattcaca 12096969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 48409095 - 48409156
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattt 64  Q
    |||||| ||||| |||||||||| |||||||| |||||||||| ||  ||||||||||||||    
T  48409095 actttgttattggttactactttcctttgctccacacatcatatttcgtattggtgtgattt 48409156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 4510394 - 4510338
Alignment:
Q  29 ttgctcgacacatcatagtttttattggtgtg-attttgagtctgaattcacaacaa 84  Q
    |||||| |||||||||||||| |||||||||| | |||||||| |||||||||||||    
T  4510394 ttgctccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaacaa 4510338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 4512236 - 4512180
Alignment:
Q  29 ttgctcgacacatcatagtttttattggtgtg-attttgagtctgaattcacaacaa 84  Q
    |||||| |||||||||||||| |||||||||| | |||||||| |||||||||||||    
T  4512236 ttgctccacacatcatagtttgtattggtgtgaaatttgagtccgaattcacaacaa 4512180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30024639 - 30024562
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||| |||| |||||||||| ||||| ||     |||||||||| ||||||| |||||||||||| ||||| ||||||    
T  30024639 ttactttgaaattggttactactttcctttgttc-----atcatagtttatattggtatgattttgagtccgaatttacaaca 30024562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 2360827 - 2360774
Alignment:
Q  29 ttgctcgacacatcatagtttttattggtgtg-attttgagtctgaattcacaa 81  Q
    |||||| |||||||||||||| |||||||||| ||||||||||  |||||||||    
T  2360827 ttgctccacacatcatagtttgtattggtgtgaattttgagtccaaattcacaa 2360774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 3047120 - 3047062
Alignment:
Q  24 tttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||||||| ||||||| | ||||| ||||||||||||||  ||| |||||||||||||    
T  3047120 tttctttgctccacacatctttgttttcattggtgtgatttt--gtccgaattcacaacaa 3047062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 5887315 - 5887233
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    |||||||||||| |||||||||| |||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||    
T  5887315 actttgatattggttactactttcctttgctccacatatcatagtttgtattggtgtgattttgagtccgaattcacaacaaa 5887233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 31183262 - 31183343
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaaa 85  Q
    ||||||||||  |||||||||| |||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  31183262 ctttgatattagttactactttcctttgctccacacatcatggtttgtattggtgtgattttgagtccgaattcacaacaaa 31183343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 534045 - 534128
Alignment:
Q  2 tactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||| |||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  534045 tactttgaaattggttactactttcctttgctccacacatcatagtttctattggtgtgagttttgagtccgaattcacaacaa 534128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 30682803 - 30682721
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| | |||||||||||    
T  30682803 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagtccgtattcacaacaa 30682721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 538306 - 538387
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaa 81  Q
    ||||||||| |||| ||| |||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  538306 ttactttgaaattggttattactttcctttgctccacacatcatagtttatattggtgtgagttttgagtctgaattcacaa 538387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 33831966 - 33832046
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||| ||| |||||||||| |||||||| |||||||||||||| |||| |||| |||||||||| ||||||||||||    
T  33831966 actttgattttggttactactttcctttgctccacacatcatagtttgtatttgtgtaattttgagtccgaattcacaaca 33832046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 3075629 - 3075548
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||||| ||| |||||| |||||||| |||||||||||||| ||||||||||| |||| |||| |||||||||||||    
T  3075629 ctttgatattggttattactttcctttgctccacacatcatagtttgtattggtgtgagtttttagtccgaattcacaacaa 3075548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 39468429 - 39468348
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||| | ||||||||  ||||||||||||    
T  39468429 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtaagttttgagttcgaattcacaaca 39468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 8565828 - 8565748
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||| ||||| |||||||||| |||||||| |||||||||||||| |||| |||||||||||| ||  |||||||||||    
T  8565828 actttgttattggttactactttcctttgctccacacatcatagtttatattagtgtgattttgaatccaaattcacaaca 8565748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 16649715 - 16649635
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||  || |||||||||| |||||||| |||||||||||||| ||||||| |||||||||||  ||||||||||||    
T  16649715 actttgattgtggttactactttcctttgctccacacatcatagtttgtattggtatgattttgagttcgaattcacaaca 16649635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 42426116 - 42426033
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaaa 85  Q
    |||||||||||| ||||||||||  ||||||| |||||||||||||| |||| |||||| ||||||||  ||||||||||||||    
T  42426116 actttgatattggttactactttcttttgctccacacatcatagtttgtatttgtgtgagttttgagttcgaattcacaacaaa 42426033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 42428311 - 42428244
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagt 69  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||    
T  42428311 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgagttttgagt 42428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 30182876 - 30182958
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaa 84  Q
    |||||| ||||| |||||||||| |||||||| |||||||||||||| | ||||||||||||||||  | |||||||||||||    
T  30182876 actttgttattggttactactttcctttgctccacacatcatagtttgttttggtgtgattttgagaccggaattcacaacaa 30182958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 13240037 - 13240118
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaac 82  Q
    ||||||| | |||| |||||||||| |||| ||| |||||||||||||| |||| ||||||||||||||  |||||||||||    
T  13240037 ttactttaaaattggttactactttcctttactccacacatcatagtttgtattagtgtgattttgagttcgaattcacaac 13240118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28750538 - 28750455
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    ||||||| | |||| |||||||||| |||||||| |||||||||| ||| ||||||||||| |||||||||  |||||||||||    
T  28750538 ttactttaaaattggttactactttcctttgctccacacatcataatttgtattggtgtgagttttgagtccaaattcacaaca 28750455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 19806658 - 19806729
Alignment:
Q  11 attgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||| |||||||||| |||||| | |||||||||||||| |||||||| | ||||||||| ||||||||||||    
T  19806658 attggttactactttcctttgccccacacatcatagtttgtattggtgag-ttttgagtccgaattcacaaca 19806729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 25413048 - 25413112
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttga 67  Q
    |||| ||||||| |||||| ||| |||||||| |||||||||||||  |||||||||||||||||    
T  25413048 acttggatattgattactaatttcctttgctccacacatcatagttcgtattggtgtgattttga 25413112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 16409767 - 16409830
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttg 66  Q
    |||||| || || |||||||||| |||||||| |||||||||| ||| ||||||||||||||||    
T  16409767 actttgttagtggttactactttcctttgctccacacatcatactttgtattggtgtgattttg 16409830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 40147555 - 40147610
Alignment:
Q  29 ttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    |||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  40147555 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaaca 40147610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 42927178 - 42927261
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    |||||||||||||  || ||||||| |||||||| ||||||| | |||||  ||||| |||||||||||  |||||||||||||    
T  42927178 ttactttgatattagttgctactttcctttgctccacacatctttgttttcgttggtatgattttgagttcgaattcacaacaa 42927261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 32637124 - 32637190
Alignment:
Q  16 ttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaa 81  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||||| |||||| || ||||||||||    
T  32637124 ttactactttcctttactccacacatcatagtttgtattggtgtgagttttgaatccgaattcacaa 32637190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 36073923 - 36073861
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgatttt 65  Q
    |||||| ||||| ||| |||||| |||||||| |||||||||||||| |||||||||| ||||    
T  36073923 actttgttattggttattactttcctttgctccacacatcatagtttgtattggtgtggtttt 36073861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 13488488 - 13488569
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    ||||||| |||| ||| |||||| |||| ||| |||||||||| ||| |||||||||||  |||||||| ||||||||||||    
T  13488488 actttgaaattggttattactttcctttactccacacatcatattttgtattggtgtgagatttgagtccgaattcacaaca 13488569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 13343348 - 13343411
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttg 66  Q
    |||||| ||||| |||||||||| |||||||| |||||||||||||  |||| |||||| ||||    
T  13343348 actttgttattggttactactttcctttgctccacacatcatagttcgtattagtgtgactttg 13343411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37439427 - 37439494
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttt---tattggtgtgattttg 66  Q
    ||||||||| |||| ||||||||| | ||||||| |||||||||||||||   ||||||||||||||||    
T  37439427 ttactttgaaattggttactacttct-tttgctccacacatcatagttttttgtattggtgtgattttg 37439494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 6741734 - 6741665
Alignment:
Q  11 attgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||||| |||||||||||| ||||||| | ||||| |||| ||| |||||  ||||||||||||||||    
T  6741734 attgtttacta-ttttctttgctccacacatctttgttttcattgatgttatttt--gtctgaattcacaaca 6741665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26954173 - 26954091
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    ||||||||| |||| ||||||||||  ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  26954173 ttactttgaaattggttactactttcttttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 26954091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28137293 - 28137211
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||||||||| |||||||||| |||||||| |||| ||||||||| |||||||||||||||||| | ||||||||||||    
T  28137293 ttactttgatattggttactactttcctttgctccacacgtcatagtttgtattggtgtgattttgagaccgaattcacaaca 28137211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 5408950 - 5408867
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtct-gaattcacaacaaa 85  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||    
T  5408950 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgactttgagactggaattcacaacaaa 5408867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 5413275 - 5413192
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtct-gaattcacaacaaa 85  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| |||||| || ||||||||||||||    
T  5413275 actttgatattggttactactttcctttgctccacacatcatagtttgtattggtgtgactttgagactggaattcacaacaaa 5413192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 3038806 - 3038729
Alignment:
Q  4 ctttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaa 81  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||  ||||||||||    
T  3038806 ctttgatattggttattactttcctttgctcgacacatcatagtttgtattggtctgattttgagttcgaattcacaa 3038729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 16452208 - 16452126
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaa 84  Q
    |||||| ||||| |||||||||| |||| ||| |||||||||||||  |||||||||||||||||| || |||||||||||||    
T  16452208 actttgttattggttactactttcctttactccacacatcatagttcgtattggtgtgattttgagatcggaattcacaacaa 16452126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 5406083 - 5406025
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga 61  Q
    ||||| |||||| ||||||||||||||| ||| |||||||||||||| |||||||||||    
T  5406083 actttaatattggttactacttttctttactccacacatcatagtttgtattggtgtga 5406025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 5410408 - 5410350
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga 61  Q
    ||||| |||||| ||||||||||||||| ||| |||||||||||||| |||||||||||    
T  5410408 actttaatattggttactacttttctttactccacacatcatagtttgtattggtgtga 5410350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 9182911 - 9182857
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggt 57  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||| |||||||    
T  9182911 actttgatattggttactactttcctttgctccacacatcatagtttgtattggt 9182857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 16569307 - 16569389
Alignment:
Q  3 actttgatattgtttactacttttcttt-gctcgacacatcatagtttt-tattggtgtgattttgagtctgaattcacaaca 83  Q
    |||||||| ||| |||||||||| |||| |||| |||||||||||||   |||||||||||||||||||| ||||||||||||    
T  16569307 actttgattttggttactactttccttttgctccacacatcatagttgaatattggtgtgattttgagtccgaattcacaaca 16569389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 14521541 - 14521477
Alignment:
Q  20 tacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    ||||||||||||||| ||||||||||| ||| |||||||||| ||||||||| |||||||||||||    
T  14521541 tacttttctttgctccacacatcatag-tttcattggtgtgagttttgagtccgaattcacaacaa 14521477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 22963561 - 22963508
Alignment:
Q  31 gctcgacacatcatagtttttattggtgtgattttgagtct-gaattcacaaca 83  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  22963561 gctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 22963508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 23824832 - 23824885
Alignment:
Q  31 gctcgacacatcatagtttttattggtgtgattttgagtct-gaattcacaaca 83  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  23824832 gctccacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 23824885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 602958 - 602902
Alignment:
Q  29 ttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaacaa 84  Q
    |||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  602958 ttgctccacacatcatagtttgtattggtgtgagttttgagtccgaattcacaacaa 602902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33160233 - 33160169
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgatttt 65  Q
    ||||||||| |||| |||||| ||| |||||||| |||||||||||||| ||||||| |||||||    
T  33160233 ttactttgaaattggttactattttcctttgctccacacatcatagtttgtattggtatgatttt 33160169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 31404555 - 31404493
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgatttt 65  Q
    |||||||||||| |||||| ||| |||||||| |||||||||||||  |||||| ||||||||    
T  31404555 actttgatattgattactattttcctttgctccacacatcatagttcgtattggagtgatttt 31404493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 2171407 - 2171342
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag 68  Q
    |||||| || || |||||||||| |||||||| |||||||||||||  ||||||||||| ||||||    
T  2171407 actttgttagtggttactactttcctttgctccacacatcatagttcgtattggtgtgactttgag 2171342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 30834414 - 30834349
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag 68  Q
    |||||| ||||| |||||| ||| |||||||| |||||||||| ||  ||||||||||||||||||    
T  30834414 actttgttattggttactattttcctttgctccacacatcatatttcgtattggtgtgattttgag 30834349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 257308 - 257244
Alignment:
Q  19 ctacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||| |||||||| |||||| ||| || | ||||||||||||||||||  |||||||||||||    
T  257308 ctactttcctttgctccacacattataattat-attggtgtgattttgagttcgaattcacaacaa 257244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 148994 - 148914
Alignment:
Q  1 ttactttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaa 81  Q
    |||||||||| ||| |||||||||| |||||||| |||||| ||||||| ||||| |||||||||||||| ||||||||||    
T  148994 ttactttgatgttggttactactttcctttgctccacacattatagtttgtattgatgtgattttgagtccgaattcacaa 148914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 114891 - 114955
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttt-tattggtgtgattttg 66  Q
    |||||||||||| ||| |||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  114891 actttgatattggttattactttcctttgctccacacatcatagttttgtattggtgtgattttg 114955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 1382 - 1301
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtga-ttttgagtctgaattcacaaca 83  Q
    ||||| |||||| |||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||  ||||||||||||    
T  1382 actttaatattgattactactttcctttgctccacacatcatagattgtattggtgtgagttttgtgttcgaattcacaaca 1301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 20295 - 20215
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgagtctgaattcacaacaa 84  Q
    ||||||| |||| ||||||| || |||||||| |||||||||||||| ||||||| |||  ||||||| |||||||||||||    
T  20295 actttgacattggttactaccttcctttgctccacacatcatagtttgtattggtatga-gttgagtccgaattcacaacaa 20215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 434822 - 434905
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag-tctgaattcacaacaaa 85  Q
    ||||| ||| || |||||||||| |||||||| |||||||||||||  ||||||||||| ||||||  | ||||||||||||||    
T  434822 actttaataatggttactactttcctttgctccacacatcatagttcgtattggtgtgactttgagaacggaattcacaacaaa 434905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 11854 - 11919
Alignment:
Q  3 actttgatattgtttactacttttctttgctcgacacatcatagtttttattggtgtgattttgag 68  Q
    |||||| || || |||||||||| |||||||| |||||||||||||  ||||||||||| ||||||    
T  11854 actttgttagtggttactactttcctttgctccacacatcatagttcgtattggtgtgactttgag 11919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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