View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14493_low_4 (Length: 746)
Name: NF14493_low_4
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 252 - 689
Target Start/End: Complemental strand, 35211157 - 35210694
Alignment:
| Q |
252 |
tggtttatttacctcttgtgttttaagaaaggacacaacgtatttgatgaggatagtattagtattgagattgttta----------------aattgat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35211157 |
tggtttatttacctcttgtgttttaagaaaggacacaacgtatttgatgaggatagtattagtattgagattgtttaggtaacctggtgcctaaattgat |
35211058 |
T |
|
| Q |
336 |
aactttatgttcaccccccattcattttgtgtaaatattgttattttattaaagaatgagaatgaatattctaattattttggtatgggatggtacaact |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35211057 |
aactttatgttcaccccccattcattttgtgtaaatattgttattttattaaagaatgagaatgaatattctaattattttggtatgggatggtacaact |
35210958 |
T |
|
| Q |
436 |
ttgcagcatcagcagcacttggaatatactatggtgattgtcctaactatgatgaccggttttaaagagatacttttacatataaatcggtcacaaattt |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35210957 |
ttgcagcatcagcagcacttggaatatactatggtgattgtcctaactatgatgaccggttttaaagagatgcttttacatataaatcggtcacaaattt |
35210858 |
T |
|
| Q |
536 |
tccatgttgatcatgaatcaaactaccataaattgagcttctattgttggtaaaatgtg----------attcagtttgagacgtccaataggaagatga |
625 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
35210857 |
tccatgttgatcatgaatcaaactaccataaattgagcttctattgtcgttaaaatgtgatacatcaacatttagtttgagacgtccaataggaagatga |
35210758 |
T |
|
| Q |
626 |
acccagttatgcttgtgttgttcaagttgattccttgcaattcagtcataatgtcatcaacgtg |
689 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35210757 |
acccagttatgcttctgttgttcaagttgattccttgcaattcagtcataatgtcatcaacgtg |
35210694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 35211382 - 35211245
Alignment:
| Q |
27 |
gagtattttaaagacaataccccactttatataagtaccaaacatttatttgtatttaattnnnnnnnntatagtgtgaaatttaattcttatgagatgc |
126 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35211382 |
gagtattttaaatacaataccccactttatataagtaccaaacatttatttgtatttaattaaaaaaaatatagtgtgaaatttaattcttatgagatgc |
35211283 |
T |
|
| Q |
127 |
atgagtttaaaaacttttctttgattcttaggcgtagg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35211282 |
atgagtttaaaaacttttctttgattcttaggcgtagg |
35211245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 35210673 - 35210631
Alignment:
| Q |
689 |
gtttctctctcatatttgatagaaaagaaaatatgaacttgtt |
731 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35210673 |
gtttctctctcatatttgatagaaaagaaaatatgaacttgtt |
35210631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 599
Target Start/End: Original strand, 24351780 - 24351849
Alignment:
| Q |
530 |
aaattttccatgttgatcatgaatcaaactaccataaattgagcttctattgttggtaaaatgtgattca |
599 |
Q |
| |
|
|||||| |||||||||||| |||| ||||| |||||| ||| ||||||||| || |||||||||||||| |
|
|
| T |
24351780 |
aaatttaccatgttgatcacgaattaaactttcataaactgaacttctattgctgataaaatgtgattca |
24351849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University