View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14493_low_8 (Length: 528)
Name: NF14493_low_8
Description: NF14493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14493_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 14 - 514
Target Start/End: Original strand, 7200164 - 7200664
Alignment:
| Q |
14 |
atgaaaagatgatagatcatacacagtggttaggatatgagaactacatatgtcatatctttagacaacgtgggactaaacacaaaccgtcattcccaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7200164 |
atgaaaagatgatagatcatacacagtggttaggatatgagaactacatatgtcatatctttagacaacgtgggactaaacacaaaccgtcattcccaac |
7200263 |
T |
|
| Q |
114 |
agaatgaaggtgctgcagactacaacatagccaacccaaagtttccgctattaaagcggctagcggaaaactacaattaatgcgactttcagctttctaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
7200264 |
agaatgaaggtgctgcagactacaacataggcaacccaaagtttccgctattaaagcggctagcggaaaactacaattaatgctactttcatctttctaa |
7200363 |
T |
|
| Q |
214 |
catattttaattgctaaactgaataaggtcatctccattcccattaaatatataaatatttccacactaccttctatccaataaagatctttgctttcta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7200364 |
catattttaattgctaaactgaataaggtcatctccattcccattaaatatataaatatttccacactaccttctatccaataaagatctttgctttcta |
7200463 |
T |
|
| Q |
314 |
gatctttatgtttttcgaaactatatgcaatttcagttgataatgaatgtatgataatattgaatcccggttgattcagtgtcatgcttaatttcctact |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7200464 |
gatctttatgtttttcgaaactatatgcaatttcagttgataatgaatgtatgataatattgaatcccggttgattcagtgtcatgcttaatttcctact |
7200563 |
T |
|
| Q |
414 |
aattgttaccaatttgattttacaggctggtgtaacattattgttgatcaacttaagcaatcaaactcagttcatactcaatgtgaaaaaccatgtaact |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7200564 |
aattgttaccaatttgattttacaggctggtgtaacattattgttgatcaacttaagcaatcaaactcagttcatactcaatgtgaaaaaccatgtaact |
7200663 |
T |
|
| Q |
514 |
g |
514 |
Q |
| |
|
| |
|
|
| T |
7200664 |
g |
7200664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 189 - 417
Target Start/End: Original strand, 7206896 - 7207126
Alignment:
| Q |
189 |
attaatgcgactttcagctttctaacatattttaattgctaaactgaataaggtcatctccattcccattaaatatataaatatttccacactaccttct |
288 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7206896 |
attaacgcggctttcagctttttaacatattttaattgctaaactgaataatgtcatctccattcccattaaatacataaatatttccacactaccttct |
7206995 |
T |
|
| Q |
289 |
-atccaataaagatctttgctttctagatc-tttatgtttttcgaaactatatgcaatttcagttgataatgaatgtatgataatattgaatcccggttg |
386 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
7206996 |
gatcgaataaagatctttgctttctagatcttttatgttttttgaaactacatgcaatttcagtttataatgaatgtatgatagtattgaatccaggttg |
7207095 |
T |
|
| Q |
387 |
attcagtgtcatgcttaatttcctactaatt |
417 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |
|
|
| T |
7207096 |
attcagtgtcatgcttaatttcatagtaatt |
7207126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 414 - 514
Target Start/End: Original strand, 7207193 - 7207293
Alignment:
| Q |
414 |
aattgttaccaatttgattttacaggctggtgtaacattattgttgatcaacttaagcaatcaaactcagttcatactcaatgtgaaaaaccatgtaact |
513 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7207193 |
aattcttaccaatttgattttacaggctggtgtaacattactgttgatcaacttaagcaatcaaactgagttcatactcaatgtgaaaaaccatgtaact |
7207292 |
T |
|
| Q |
514 |
g |
514 |
Q |
| |
|
| |
|
|
| T |
7207293 |
g |
7207293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 421 - 514
Target Start/End: Original strand, 7213203 - 7213296
Alignment:
| Q |
421 |
accaatttgattttacaggctggtgtaacattattgttgatcaacttaagcaatcaaactcagttcatactcaatgtgaaaaaccatgtaactg |
514 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || | |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
7213203 |
accaatttcattttacaggctggtgtaacactactagtgatcaacataagcaatcaaactcagttcagactcaatgtgaaaaaccatggaactg |
7213296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 7213086 - 7213136
Alignment:
| Q |
348 |
agttgataatgaatgtatgataatattgaatcccggttgattcagtgtcat |
398 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||| || |||||||||||||| |
|
|
| T |
7213086 |
agttgataacgaatgtttgaaaatattgaatccaggatgattcagtgtcat |
7213136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 497
Target Start/End: Original strand, 45390092 - 45390153
Alignment:
| Q |
436 |
caggctggtgtaacattattgttgatcaacttaagcaatcaaactcagttcatactcaatgt |
497 |
Q |
| |
|
|||| ||| ||||||||| || | ||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
45390092 |
caggatggagtaacattactgctaatcaacttaagcaatcagactaagttcatactcaatgt |
45390153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University