View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_high_13 (Length: 428)
Name: NF14494_high_13
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 28490245 - 28490651
Alignment:
| Q |
19 |
gagtgtcccacaaatcttcgggtctacaacaaaagtaaagtggtggggtgccaaggtgcttgttctgcattaaaattgaagcatttttgctgcgttggaa |
118 |
Q |
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| T |
28490245 |
gagtgtcccacaaatcttcgggtctacaacaaaagtaaagtggtggggtgccaaggtgcttgttctgcattaaaattgaagcaattttgctgtgttggaa |
28490344 |
T |
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| Q |
119 |
aatattcatctccggaaacttgcgagctaagttcttactctcttgcgttcaagagggcttgtcctgatgcttatagctatccttttgattatgggacgaa |
218 |
Q |
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| T |
28490345 |
aatattcatctccgaaaacttgcgagctaagttcttactctcttgcgttcaagagggcttgtcctgatgcttatagttatccttacgattatgggacgaa |
28490444 |
T |
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| Q |
219 |
aacatttagttgttcatccgaaagttatgacattatattttgtccattttccaaaaagaaaactctttttgatactctatttcgtccttttgtaatattg |
318 |
Q |
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| T |
28490445 |
aacatttagttgttcatccgaaagttataacattatattttgtccattttccaaaaagaaaactctttttgatactctatttcgtccttttgtaatattg |
28490544 |
T |
|
| Q |
319 |
atatcggtgagtgttgtaattggaattgtggttagatgctgttggtgtcccgcacaaaaacaatatgttgacacaagtgtaattgtaaggcctgcccggc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28490545 |
atatcggtgagtgttgtaattggaattgtggttagatgttgctggtgtcccgcacaaaaacaatatgttgacacaagtgtaattgtaaggcctgcccggc |
28490644 |
T |
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| Q |
419 |
ctatgct |
425 |
Q |
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| T |
28490645 |
ctatgct |
28490651 |
T |
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