View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_high_15 (Length: 407)
Name: NF14494_high_15
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 4502068 - 4501698
Alignment:
| Q |
16 |
actttgtcaagtggaaattgaacatagtatatatagtaaacaaaatatattggtacattctttttgttttacctttccttttctcacagcttacctgtac |
115 |
Q |
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| T |
4502068 |
actttgtcaagtggaaattgaacat---------agtaaacaaaatatattggtacattctttttgttttacctttccttttctcacagcttacctgtac |
4501978 |
T |
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| Q |
116 |
agcatgtaatatatatgcagacagtccatgcaaaaattttccaacaaaggctagtagaatattatgtaagcaaaagatattgaactaaattttccaataa |
215 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4501977 |
agcatgtaatatatatgcagacagtccgtgcaaaaaatttccaacaaaggctagtagaatattatgtaagc-----atattgaactaaattttccaataa |
4501883 |
T |
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| Q |
216 |
attttccttgtctattttgtactggannnnnnnnacactgaccggataaattcttgtttctatactttttgaatgatagtaacaacaaaatttagt-nnn |
314 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4501882 |
attttccttgtctattttttactggattttttttacactgaccggataaattcttgtttctatactttttgaatgatagtaacaacaaaatttagtaaaa |
4501783 |
T |
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| Q |
315 |
nnnnnntagaatttaattttatgacctattcgaaaggtcagaagtagcgataatatgagcaaaaaatagtaacttccagaataat |
399 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4501782 |
aaacaatagaatttatttttatgacctattcgaaaggtcagaagtagcgataatatgagcaaaaaatagtaacttacagaataat |
4501698 |
T |
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