View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_high_24 (Length: 299)
Name: NF14494_high_24
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_high_24 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 36 - 299
Target Start/End: Original strand, 17993583 - 17993850
Alignment:
| Q |
36 |
ttaatgtaatttgtagtgttttctat----gtcctttaatttaccggtaacgtttgtgttcttgtaacataccgaaatgagcactattcaaaatgagatg |
131 |
Q |
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| T |
17993583 |
ttaatgtaatttgtagtcttttctatataagtccttaaatttaccggtaacgtttgtgttcttgtaacataccaaaatgagcactattcaaaatgagatg |
17993682 |
T |
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| Q |
132 |
ttgcattttctaatacagtgtaaagaagttaaccaaaatagaaatgttttcagtattttaaacatgttttttctcaaactaaacactttaaaaactcaaa |
231 |
Q |
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| T |
17993683 |
ttgcattttgtaatacagtgtaaagaagttaaacaaaatagaaatgttttcagtattttaaacatgttttttctcaaactaaacactttaaaaactcaaa |
17993782 |
T |
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| Q |
232 |
aaacatagtgtaatataagagactcatttgatacccttgtttgaggaggatgagcagaattccattta |
299 |
Q |
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| T |
17993783 |
aaccgtggtgtaatataagagactcatttgatacccttgtttgaggaggttgagcagaattccattta |
17993850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 43 - 299
Target Start/End: Original strand, 17998911 - 17999171
Alignment:
| Q |
43 |
aatttgtagtgttttctat----gtcctttaatttaccggtaacgtttgtgttcttgtaacataccgaaatgagcactattcaaaatgagatgttgcatt |
138 |
Q |
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| T |
17998911 |
aatttgtagtcttttctatataagtccttaaatttaccggtaacgtttgtgttcttgtaacataccaaaatgagcactattcaaaatgagatgttgcatt |
17999010 |
T |
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| Q |
139 |
ttctaatacagtgtaaagaagttaaccaaaatagaaatgttttcagtattttaaacatgttttttctcaaactaaacactttaaaaactcaaaaaacata |
238 |
Q |
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| T |
17999011 |
ttgtaatacagtgtaaagaagttaaacaaaatagaaatgttttcagtattttaaacatgttttttctcaaactaaacactttaaaaactcaaaaaccgta |
17999110 |
T |
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| Q |
239 |
gtgtaatataagagactcatttgatacccttgtttgaggaggatgagcagaattccattta |
299 |
Q |
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| T |
17999111 |
gtgtaatataagagactcatttgatacccttgtttgaggaggttgagcagaattccattta |
17999171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 17993408 - 17993444
Alignment:
| Q |
2 |
ttctgtattataatatattgttcagattgtcatatta |
38 |
Q |
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| T |
17993408 |
ttctgtattttattatattgttcagattgtcatatta |
17993444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 43 - 272
Target Start/End: Complemental strand, 11098418 - 11098184
Alignment:
| Q |
43 |
aatttgtagtgttttctat----gtcctttaatttaccggtaacgtttgtgttcttgtaacataccgaaatgagcactattcaaaatgagatgttgcatt |
138 |
Q |
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| T |
11098418 |
aatttgtagtcttttctatataagtccttaaatttaccggtaacgtttgtgttcttgtaacataccaaaatgagcactattcaaaatgagatgttgcatt |
11098319 |
T |
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| Q |
139 |
ttctaatacagtgtaaagaagttaaccaaaatagaaatgttttcagtattttaaacatgttttttctcaaactaaacactttaaaaactcaaaaaac-at |
237 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11098318 |
ttgtaatacagtgtaaagaagttaaacaaaatagaaatgttttcagtattttaaacatgttttttctcaaactaaacactttaaaaactcaaaaaccgca |
11098219 |
T |
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| Q |
238 |
agtgtaatataagagactcatttgatacccttgtt |
272 |
Q |
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| T |
11098218 |
agtgtaatataagagactcatttgatacccttgtt |
11098184 |
T |
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