View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_high_25 (Length: 298)
Name: NF14494_high_25
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 89 - 280
Target Start/End: Original strand, 32423322 - 32423513
Alignment:
| Q |
89 |
taagcttacaatacaaaacttgctataaatgaatatcttaccatgtttacattttatttgcctaacgaaaaatgaaacaatatcattaggcatgattttg |
188 |
Q |
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| T |
32423322 |
taagcttacaatacaaaacttgctataaatgaatatcttaccatgtttacattttatttgcctaacgaaaaatgaaacagtatcattaggcatgattttg |
32423421 |
T |
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| Q |
189 |
aaaatgtagatggataattacacactcatacatatatgtattattatagatacacattactaattttcagttgatttttctgcaattggttc |
280 |
Q |
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| T |
32423422 |
aaaatgtagatggataattacacactcatacatatatgtattattatagatacatattactaattttcagttgatttttctgcaattggttc |
32423513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 32430416 - 32430537
Alignment:
| Q |
92 |
gcttacaatacaaaacttgctataaatgaatatcttaccatgttt-acattttatttgcctaacgaaaaatgaaacaatatcattaggcatgattttgaa |
190 |
Q |
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| T |
32430416 |
gcttacaattcaaacctggctataaatgaatatcttgccatgttttacattt-atttgcctaatgaaaaaagatacaatatcattaggcataatttggaa |
32430514 |
T |
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| Q |
191 |
aatgtagatggataattacacac |
213 |
Q |
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| T |
32430515 |
aagatatatgaataattacacac |
32430537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 32430300 - 32430345
Alignment:
| Q |
20 |
tactcttcaatattcccaatttcctagttaggttgtaatcaaggga |
65 |
Q |
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| T |
32430300 |
tactcttcaaaattctcaatttcctaattaggttgtaatcaaggga |
32430345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 32423232 - 32423270
Alignment:
| Q |
18 |
agtactcttcaatattcccaatttcctagttaggttgta |
56 |
Q |
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| T |
32423232 |
agtactcttcaaaattcccaatttcctaattaggttgta |
32423270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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