View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_high_26 (Length: 294)
Name: NF14494_high_26
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 35775133 - 35774862
Alignment:
| Q |
6 |
agaagcaaagggaaacaaaaaacaattatccatcctcagttaagatagacatgccaagcagctacatatccacaacacacatgattaccatcataggcag |
105 |
Q |
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| T |
35775133 |
agaagccaagggaaacaaaaaacaattatccatcctcagttaagatagacatgccaagcaactacatatccacaacacacatgattaccatcataggcag |
35775034 |
T |
|
| Q |
106 |
aaaacatcaagtccattttaaaccgcaaagatatcaaaagttctgaatacaagcagacctgatatgcttccatggaatgatcagcagcctcttttcgttc |
205 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35775033 |
aaaacattaagtccattttaaaccgcaaagatatcaaaagttctgaatacaagcagacctgatatgcttccatggaatgatcagcagcctcttttcgttc |
35774934 |
T |
|
| Q |
206 |
atcaccgttcttaaattccgccaaataccgataataatcccctttcattttatagaaaaagacactagattc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35774933 |
atcaccgttcttaaattccgccaaataccgataataatcccctttcattttatagaaaaagacactagattc |
35774862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 4802789 - 4802700
Alignment:
| Q |
162 |
acctgatatgcttccatggaatgatcagcagcctcttttcgttcatcaccgttcttaaattccgccaaataccgataataatcccctttc |
251 |
Q |
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||||||||||||| || ||| ||||||||||||||||| | |||||||| ||||||| || |||| ||| ||||||||||| |||||| |
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| T |
4802789 |
acctgatatgctttcaaggactgatcagcagcctctttcctctcatcaccactcttaaactcagccagataacgataataatcgcctttc |
4802700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 32200137 - 32200105
Alignment:
| Q |
219 |
aattccgccaaataccgataataatcccctttc |
251 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
32200137 |
aattccgccaaataccgataataatcacctttc |
32200105 |
T |
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