View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_high_3 (Length: 688)
Name: NF14494_high_3
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 48126282 - 48125950
Alignment:
| Q |
18 |
attcctttatacaattttcaccactcagatttttaatcagagtctctctgttacacaacactttttaatcaaacgtgtgtcccgtgtccaacaagtgtta |
117 |
Q |
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| T |
48126282 |
attcctttatacaattttcaccactcagatttttaatcagagtctctctgttacacaacactttttaatcaaacgtgtgtcccgtgtccaacaagtgtta |
48126183 |
T |
|
| Q |
118 |
gtactgacatattcaatttttcaataatcaaagacaatttgtcaatgtcgtgtcggtgtccggggcgtcagcttttatttatgtggtgttgatttaggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48126182 |
gtactgacatattcaatttttcaataatcaaagacaatttgtcaatgtcgtgtcggtgtccggggcgtcagcttttatttatgtggtgttgatttaggat |
48126083 |
T |
|
| Q |
218 |
taaataaaaatatagagaatgcaggttcaccaaactatagtggaactggcatcaaaataatatcaactcgttgggtatcaatgtatcatattacttttct |
317 |
Q |
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| T |
48126082 |
taaataaaaatatagagaatgcaggttcaccaaactatagtggaactggcatcaaaataatatcaactcgttgggtatcaatgtatcatattacttttct |
48125983 |
T |
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| Q |
318 |
atagtttaatctcttgcaaggttcttggtatct |
350 |
Q |
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| T |
48125982 |
atcgtttaatctcttgcaaggttcttggtatct |
48125950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 353 - 688
Target Start/End: Original strand, 48125577 - 48125912
Alignment:
| Q |
353 |
aacaatatctaaagccaataatagtttcctaggcacttcaaacacggatgaagtctatagaattccaccgcgaaatgtaatttgaagttaaacaaagaga |
452 |
Q |
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| T |
48125577 |
aacaatatctaaagccaataatagtttcctaggcacttcaaacacggatgtagtctatagaattccaccgcgaaatgtaatttgaagttaaacaaagaga |
48125676 |
T |
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| Q |
453 |
aacaaaaacataatatgaactaaatgtggtaagggaacaaaagtttcgtactc--agaaccttgaaacttgttacaaaatacatagtttctagccaataa |
550 |
Q |
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| T |
48125677 |
aacaaaaacataatatgaactaaatgtggtaagggaacaaaagtttcgtactcatagaaccttgaaacttgttacaaaatacatagtttctagccaaaga |
48125776 |
T |
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| Q |
551 |
atttttgacctttctaaattcagattgacgcctttcaacctgcaaaaataacttgcagagttatatatgacaaagaaaagtaatacaaaatacaaagctg |
650 |
Q |
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| T |
48125777 |
atttttgacctttctaaattcagattgacgcctttcaacctgcaaaaataacttacagagttatatatgacaa--aaaagtaatacaaaatacaaagctg |
48125874 |
T |
|
| Q |
651 |
agatggaaattgtgtacatatagaaaaataaatttgca |
688 |
Q |
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| T |
48125875 |
agatggaaattgtgtacatataaaaaaataaatttgca |
48125912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 602
Target Start/End: Complemental strand, 48139194 - 48139048
Alignment:
| Q |
458 |
aaacataatatgaactaaatgtggtaagggaacaaaagtttcgtactc--agaaccttgaaacttgttacaaaatacatagtttctagccaataaatttt |
555 |
Q |
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|||||||| ||||||||||||||||||||| | |||| || | |||| | | |||| |||||| || | | || ||||||| ||| |||||||| || |
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| T |
48139194 |
aaacataacatgaactaaatgtggtaaggggataaaatttccatacttgaatagccttcaaacttattccgagatgaatagtttgtagtcaataaatctt |
48139095 |
T |
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| Q |
556 |
tgacctttctaaattcagattgacgcctttcaacctgcaaaaataac |
602 |
Q |
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| T |
48139094 |
tgacctttccaaattccgattgacgcctttcaatctgcaaaaataac |
48139048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 661
Target Start/End: Original strand, 48115614 - 48115818
Alignment:
| Q |
457 |
aaaacataatatgaactaaatgtggtaagggaacaaaagtttcgtactc--agaaccttgaaacttgttacaaaatacatagtttctagccaataaattt |
554 |
Q |
| |
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||||||||| || ||||||||| ||||| ||||||| || | |||||| | | ||||||||||| ||| | ||| |||| |||||| |||||| | |
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| T |
48115614 |
aaaacataacataaactaaatgcggtaaaggaacaacagatccgtacttgtatagccttgaaacttattaggagataaatagcttctagtcaataatcct |
48115713 |
T |
|
| Q |
555 |
ttgacctttctaaattcagattgacgcctttcaacctgcaaaaataacttgcagagttatatatgacaaagaaaagtaatacaaaatacaaagctgagat |
654 |
Q |
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||||| |||| |||||| |||||| ||| |||||||||||||||||| | | | | |||||||| || ||||||||||||| ||| | ||| ||||| |
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| T |
48115714 |
ttgacttttccaaattctgattgatgccgttcaacctgcaaaaataagctataaaat--tatatgaccaataaaagtaatacaagatatagagcagagat |
48115811 |
T |
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| Q |
655 |
ggaaatt |
661 |
Q |
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||||||| |
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| T |
48115812 |
ggaaatt |
48115818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 598
Target Start/End: Original strand, 48135885 - 48135938
Alignment:
| Q |
545 |
caataaatttttgacctttctaaattcagattgacgcctttcaacctgcaaaaa |
598 |
Q |
| |
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|||||||| ||||||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
48135885 |
caataaatctttgacctttccgaattctaattgacggctttcaacctgcaaaaa |
48135938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 467 - 662
Target Start/End: Complemental strand, 32022433 - 32022238
Alignment:
| Q |
467 |
atgaactaaatgtggtaagggaacaaaagtttcgtactcagaa--ccttgaaacttgttacaaaatacatagtttctagccaataaatttttgacctttc |
564 |
Q |
| |
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||||||||||| || ||||||||||||||||| |||| || || | ||||||||| | |||||||||||||| |||||| | ||||||||||| |
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| T |
32022433 |
atgaactaaatatgaaaagggaacaaaagtttcatacttggacagccctcaaacttgttgtgagatacatagtttctactcaataattctttgacctttc |
32022334 |
T |
|
| Q |
565 |
taaattcagattgacgcctttcaacctgcaaaaataacttgcagagttatatatgacaaagaaaagtaatacaaaatacaaagctgagatggaaattg |
662 |
Q |
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|||||||||||||||||||||||||||||||||||||| | || | |||||||||| ||||||||||||| ||| | ||| ||||||||||||| |
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| T |
32022333 |
cgaattcagattgacgcctttcaacctgcaaaaataacttata-agat-catatgacaaataaaagtaatacaagatatagagcagagatggaaattg |
32022238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 604
Target Start/End: Complemental strand, 32010375 - 32010337
Alignment:
| Q |
566 |
aaattcagattgacgcctttcaacctgcaaaaataactt |
604 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32010375 |
aaattcagattgacgcctttcaacctgcaaaaataactt |
32010337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 533 - 602
Target Start/End: Complemental strand, 25251791 - 25251722
Alignment:
| Q |
533 |
atagtttctagccaataaatttttgacctttctaaattcagattgacgcctttcaacctgcaaaaataac |
602 |
Q |
| |
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||||||| ||| |||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||| |
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| T |
25251791 |
atagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaataac |
25251722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 25252049 - 25252007
Alignment:
| Q |
355 |
caatatctaaagccaataatagtttcctaggcacttcaaacac |
397 |
Q |
| |
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||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
25252049 |
caatatctaaagccaataatagtttcccaagtacttcaaacac |
25252007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 598
Target Start/End: Original strand, 25247863 - 25247916
Alignment:
| Q |
545 |
caataaatttttgacctttctaaattcagattgacgcctttcaacctgcaaaaa |
598 |
Q |
| |
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|||||||| ||||||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
25247863 |
caataaatctttgacctttccgaattctaattgacggctttcaacctgcaaaaa |
25247916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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