View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14494_high_6 (Length: 576)

Name: NF14494_high_6
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14494_high_6
NF14494_high_6
[»] scaffold0368 (2 HSPs)
scaffold0368 (74-316)||(12858-13101)
scaffold0368 (373-565)||(13155-13335)
[»] chr1 (4 HSPs)
chr1 (74-316)||(42837706-42837949)
chr1 (373-565)||(42837472-42837652)
chr1 (186-304)||(25281049-25281163)
chr1 (74-166)||(25280964-25281058)
[»] chr8 (2 HSPs)
chr8 (186-304)||(12346777-12346892)
chr8 (85-166)||(12346703-12346786)
[»] chr4 (1 HSPs)
chr4 (19-75)||(54419027-54419083)
[»] chr6 (1 HSPs)
chr6 (19-75)||(6254465-6254521)


Alignment Details
Target: scaffold0368 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 74 - 316
Target Start/End: Original strand, 12858 - 13101
Alignment:
Q  74 atctttatacataatccaaaggtacataatgcatatccctaaccctaaaaatttgacgcctacctctttcaaatttgaatttcaaattcccttcaactta 173  Q
    |||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  12858 atctttatatctaatctaaaggtacataatgcata-cccaaaccctaaaaatttggcgcctccctcttccaaatttgaatttcaaattcccttcaactta 12956  T
Q  174 nnnnnnnn-gataaaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatatacatt-accattttgtcttccacgttac 271  Q
             || ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||     
T  12957 tttttttttgacaaaattcccttcaacctattgtttgcatcctaaatgacatgcatttactctcatctatatgcatttaccattttgtcttccacattat 13056  T
Q  272 tttttcttcttcattttccaacaaagcaaaatttgtctctgaatt 316  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  13057 tttttcttcttcatttttcaacaaagcaaaatttatctctgaatt 13101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 373 - 565
Target Start/End: Original strand, 13155 - 13335
Alignment:
Q  373 actggaaacccgccaccatttactcctctgatttattcctcgccggcagaaagttaaagccatgcatgctcttactcttatgcttcttcccttttcaact 472  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||            |||||||||||||||||||||||||||||||    
T  13155 actggaaacccgccaccatttactcctctgatttatccctcgccgacagaaagttaa------------tcttactcttatgcttcttcccttttcaact 13242  T
Q  473 ccagcggcgctgaactcggcggcagatccatggttctgagtctcgacattcataacgaggacctaagacaacacacttggttattcatctcac 565  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |  |||||||| ||||||    
T  13243 ccagcggcgctgaactcggcggcagatccatggctctgagtctcgacattcataacgaggacctaacacaacacgcagggttattcttctcac 13335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 74 - 316
Target Start/End: Complemental strand, 42837949 - 42837706
Alignment:
Q  74 atctttatacataatccaaaggtacataatgcatatccctaaccctaaaaatttgacgcctacctctttcaaatttgaatttcaaattcccttcaactta 173  Q
    |||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  42837949 atctttatatctaatctaaaggtacataatgcata-cccaaaccctaaaaatttggcgcctccctcttccaaatttgaatttcaaattcccttcaactta 42837851  T
Q  174 nnnnnnnn-gataaaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatatacatt-accattttgtcttccacgttac 271  Q
             || ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||     
T  42837850 tttttttttgacaaaattcccttcaacctattgtttgcatcctaaatgacatgcatttactctcatctatatgcatttaccattttgtcttccacattat 42837751  T
Q  272 tttttcttcttcattttccaacaaagcaaaatttgtctctgaatt 316  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  42837750 tttttcttcttcatttttcaacaaagcaaaatttatctctgaatt 42837706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 373 - 565
Target Start/End: Complemental strand, 42837652 - 42837472
Alignment:
Q  373 actggaaacccgccaccatttactcctctgatttattcctcgccggcagaaagttaaagccatgcatgctcttactcttatgcttcttcccttttcaact 472  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||            |||||||||||||||||||||||||||||||    
T  42837652 actggaaacccgccaccatttactcctctgatttatccctcgccgacagaaagttaa------------tcttactcttatgcttcttcccttttcaact 42837565  T
Q  473 ccagcggcgctgaactcggcggcagatccatggttctgagtctcgacattcataacgaggacctaagacaacacacttggttattcatctcac 565  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |  |||||||| ||||||    
T  42837564 ccagcggcgctgaactcggcggcagatccatggctctgagtctcgacattcataacgaggacctaacacaacacgcagggttattcttctcac 42837472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 186 - 304
Target Start/End: Original strand, 25281049 - 25281163
Alignment:
Q  186 aaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatataca-ttaccattttgtcttccacgttactttttcttcttca 284  Q
    |||||||||| |||||||| ||||||||| |||| || ||||||||||||||||||||  || |||||||||||||| |||||||||||    |||||||    
T  25281049 aaattccctt-aacttattgtttgcatcggaaataacatgcatttactctcatctataagcatttaccattttgtctcccacgttactt----ttcttca 25281143  T
Q  285 ttttccaacaaagcaaaatt 304  Q
    |||| |||||||||| ||||    
T  25281144 tttttcaacaaagcagaatt 25281163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 25280964 - 25281058
Alignment:
Q  74 atctttatacataatccaaaggtacataatgcatatcc-ctaaccctaaaaatttgac-gcctacctctttcaaatttgaatttcaaattccctt 166  Q
    |||||||||  |||||||||||||||||||||||| || |||||||||||||| || |  ||| |||||| ||||||||||||||||||||||||    
T  25280964 atctttatatctaatccaaaggtacataatgcataccctctaaccctaaaaatatggcaccctccctcttccaaatttgaatttcaaattccctt 25281058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 304
Target Start/End: Original strand, 12346777 - 12346892
Alignment:
Q  186 aaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatataca-ttaccattttgtcttccacgttactttttcttcttca 284  Q
    |||||||||| |||||||| ||||||||| |||| || ||||||||||||||||||||  || |||||||||||||| ||| ||||||||   |||||||    
T  12346777 aaattccctt-aacttattgtttgcatcggaaataacatgcatttactctcatctataagcatttaccattttgtctcccatgttacttt---ttcttca 12346872  T
Q  285 ttttccaacaaagcaaaatt 304  Q
    |||| |||||||||| ||||    
T  12346873 tttttcaacaaagcagaatt 12346892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 12346703 - 12346786
Alignment:
Q  85 taatccaaaggtacataatgcatatcc-ctaaccctaaaaatttgacgcc-tacctctttcaaatttgaatttcaaattccctt 166  Q
    |||||||||||||||||||||||| || |||||||||||||| || | || | |||||| ||||||||||||||||||||||||    
T  12346703 taatccaaaggtacataatgcataccctctaaccctaaaaatctggcaccctccctcttccaaatttgaatttcaaattccctt 12346786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 54419027 - 54419083
Alignment:
Q  19 tatatatatacaagtgaaccaaaacgcatatatgatagacaatgtttcatcaaatat 75  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  54419027 tatatatatacaagtgaaccaaaacgcatagatgatagacagtgtttcatcaaatat 54419083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 6254521 - 6254465
Alignment:
Q  19 tatatatatacaagtgaaccaaaacgcatatatgatagacaatgtttcatcaaatat 75  Q
    |||||||||||||||||||||||||||||| ||||||| || | |||||||||||||    
T  6254521 tatatatatacaagtgaaccaaaacgcatagatgatagtcagtatttcatcaaatat 6254465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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