View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14494_high_8 (Length: 515)

Name: NF14494_high_8
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14494_high_8
NF14494_high_8
[»] chr6 (28 HSPs)
chr6 (125-497)||(2954322-2954700)
chr6 (15-122)||(5582407-5582514)
chr6 (343-434)||(2978451-2978542)
chr6 (15-122)||(9047004-9047111)
chr6 (354-434)||(2937676-2937756)
chr6 (35-122)||(34188721-34188809)
chr6 (343-434)||(2974212-2974303)
chr6 (343-411)||(2929514-2929582)
chr6 (346-410)||(2952141-2952205)
chr6 (15-122)||(10397869-10397977)
chr6 (343-434)||(2934804-2934895)
chr6 (15-96)||(2960642-2960723)
chr6 (346-410)||(2927368-2927432)
chr6 (346-434)||(2964717-2964805)
chr6 (343-434)||(2983068-2983162)
chr6 (15-122)||(2836289-2836396)
chr6 (54-124)||(339266-339335)
chr6 (343-434)||(2658767-2658864)
chr6 (346-404)||(3003596-3003654)
chr6 (42-122)||(9695975-9696055)
chr6 (35-107)||(28614480-28614552)
chr6 (54-119)||(14939026-14939092)
chr6 (15-119)||(34249090-34249195)
chr6 (43-107)||(23663864-23663928)
chr6 (41-122)||(1781125-1781207)
chr6 (459-497)||(2974528-2974566)
chr6 (459-497)||(2996892-2996930)
chr6 (134-195)||(8349737-8349798)
[»] chr5 (29 HSPs)
chr5 (15-122)||(13694766-13694873)
chr5 (15-121)||(13694982-13695088)
chr5 (19-122)||(39605908-39606011)
chr5 (15-122)||(16567721-16567829)
chr5 (35-122)||(1672584-1672671)
chr5 (15-122)||(15503847-15503954)
chr5 (15-122)||(43228720-43228827)
chr5 (18-124)||(42989461-42989569)
chr5 (35-122)||(37779595-37779682)
chr5 (15-97)||(16667571-16667653)
chr5 (15-119)||(32953745-32953850)
chr5 (41-122)||(37607386-37607467)
chr5 (15-119)||(9738306-9738410)
chr5 (15-122)||(21068927-21069035)
chr5 (15-122)||(34443896-34444004)
chr5 (43-123)||(35468820-35468900)
chr5 (73-123)||(767230-767280)
chr5 (54-123)||(13942899-13942969)
chr5 (42-119)||(36234675-36234752)
chr5 (15-107)||(2476350-2476442)
chr5 (15-96)||(7162161-7162242)
chr5 (15-123)||(30248894-30249003)
chr5 (15-107)||(34846301-34846393)
chr5 (36-122)||(15675232-15675318)
chr5 (15-86)||(17192747-17192818)
chr5 (20-74)||(7159672-7159726)
chr5 (41-107)||(33006841-33006907)
chr5 (36-125)||(8214711-8214800)
chr5 (15-115)||(12267487-12267587)
[»] scaffold0024 (2 HSPs)
scaffold0024 (334-434)||(44713-44813)
scaffold0024 (339-434)||(35024-35119)
[»] chr2 (17 HSPs)
chr2 (15-134)||(34756598-34756718)
chr2 (15-107)||(42152604-42152696)
chr2 (15-122)||(4570556-4570663)
chr2 (16-107)||(304200-304291)
chr2 (15-124)||(13203696-13203806)
chr2 (15-87)||(25562890-25562962)
chr2 (53-122)||(33909456-33909525)
chr2 (15-122)||(41114946-41115054)
chr2 (15-90)||(16221078-16221153)
chr2 (15-92)||(15429140-15429217)
chr2 (15-76)||(28816669-28816730)
chr2 (58-135)||(41010394-41010471)
chr2 (18-118)||(22572780-22572880)
chr2 (35-107)||(2475769-2475841)
chr2 (41-105)||(27701998-27702062)
chr2 (286-328)||(1270536-1270578)
chr2 (73-122)||(15651169-15651218)
[»] chr7 (17 HSPs)
chr7 (35-122)||(41759717-41759804)
chr7 (343-434)||(3339230-3339321)
chr7 (15-122)||(5991494-5991602)
chr7 (15-108)||(815062-815155)
chr7 (16-122)||(30852275-30852380)
chr7 (41-118)||(19377319-19377395)
chr7 (15-119)||(22206763-22206868)
chr7 (15-119)||(22227871-22227976)
chr7 (35-122)||(28694148-28694236)
chr7 (15-122)||(35300517-35300625)
chr7 (41-100)||(21932881-21932940)
chr7 (15-72)||(3012279-3012336)
chr7 (15-122)||(41862396-41862503)
chr7 (45-122)||(38129111-38129186)
chr7 (19-122)||(25688271-25688375)
chr7 (143-199)||(32425271-32425327)
chr7 (15-67)||(7873297-7873349)
[»] chr1 (27 HSPs)
chr1 (15-122)||(6802177-6802284)
chr1 (15-122)||(11647071-11647178)
chr1 (10-123)||(4773936-4774050)
chr1 (15-121)||(44238936-44239042)
chr1 (15-122)||(14727248-14727356)
chr1 (19-122)||(49898345-49898449)
chr1 (15-118)||(33169359-33169462)
chr1 (15-123)||(25007393-25007502)
chr1 (47-115)||(41751909-41751977)
chr1 (15-123)||(24645983-24646091)
chr1 (18-78)||(16640366-16640426)
chr1 (15-122)||(27460626-27460734)
chr1 (15-122)||(27584090-27584198)
chr1 (10-93)||(4642142-4642225)
chr1 (19-122)||(8239210-8239313)
chr1 (53-107)||(4163388-4163442)
chr1 (15-84)||(25011613-25011682)
chr1 (15-123)||(37154067-37154176)
chr1 (15-119)||(33469018-33469121)
chr1 (15-122)||(44305342-44305450)
chr1 (15-86)||(9527012-9527083)
chr1 (31-122)||(37574864-37574955)
chr1 (17-123)||(6331605-6331710)
chr1 (149-194)||(13809949-13809994)
chr1 (58-122)||(24745334-24745398)
chr1 (145-195)||(7028239-7028289)
chr1 (145-194)||(24915125-24915174)
[»] chr8 (15 HSPs)
chr8 (15-124)||(21138135-21138245)
chr8 (15-121)||(34282974-34283081)
chr8 (17-107)||(12478081-12478171)
chr8 (10-122)||(38214689-38214802)
chr8 (10-122)||(27321922-27322034)
chr8 (15-107)||(8968276-8968368)
chr8 (15-124)||(24964961-24965071)
chr8 (54-107)||(39431790-39431843)
chr8 (16-123)||(28927989-28928096)
chr8 (42-118)||(3384135-3384211)
chr8 (286-344)||(34336235-34336293)
chr8 (208-271)||(36336659-36336722)
chr8 (49-107)||(376381-376439)
chr8 (41-122)||(36406604-36406686)
chr8 (88-120)||(13243025-13243057)
[»] chr4 (28 HSPs)
chr4 (15-122)||(50383819-50383927)
chr4 (19-122)||(15034554-15034658)
chr4 (19-122)||(32828146-32828250)
chr4 (19-121)||(1585642-1585744)
chr4 (36-122)||(2576091-2576177)
chr4 (15-123)||(6017046-6017155)
chr4 (15-123)||(40969154-40969263)
chr4 (15-121)||(41972514-41972622)
chr4 (35-122)||(25237495-25237583)
chr4 (35-122)||(9003488-9003575)
chr4 (15-122)||(31364067-31364174)
chr4 (15-122)||(32005846-32005953)
chr4 (61-124)||(52373668-52373731)
chr4 (35-124)||(9809723-9809812)
chr4 (15-124)||(31929120-31929229)
chr4 (36-121)||(49744972-49745057)
chr4 (43-122)||(8901735-8901814)
chr4 (49-122)||(36947447-36947520)
chr4 (15-107)||(4552132-4552224)
chr4 (35-122)||(9694019-9694106)
chr4 (15-122)||(10715585-10715694)
chr4 (15-122)||(10929355-10929464)
chr4 (15-122)||(2017514-2017622)
chr4 (15-107)||(11827103-11827195)
chr4 (15-124)||(4728475-4728585)
chr4 (15-86)||(46645559-46645630)
chr4 (15-119)||(14044279-14044384)
chr4 (148-192)||(3155553-3155597)
[»] scaffold0108 (1 HSPs)
scaffold0108 (41-122)||(21101-21183)
[»] chr3 (24 HSPs)
chr3 (15-123)||(41218460-41218569)
chr3 (10-122)||(9600287-9600399)
chr3 (15-122)||(37516567-37516674)
chr3 (15-122)||(53651835-53651942)
chr3 (18-119)||(33179204-33179306)
chr3 (15-124)||(41199967-41200077)
chr3 (10-122)||(53987800-53987913)
chr3 (15-122)||(26278289-26278395)
chr3 (15-116)||(41358704-41358805)
chr3 (24-124)||(38239388-38239488)
chr3 (343-434)||(49613641-49613732)
chr3 (15-122)||(44047520-44047628)
chr3 (15-122)||(25391901-25392009)
chr3 (15-122)||(47511721-47511826)
chr3 (354-437)||(49618640-49618723)
chr3 (15-88)||(7500915-7500988)
chr3 (41-122)||(54845987-54846068)
chr3 (21-121)||(43447476-43447571)
chr3 (19-122)||(44625634-44625738)
chr3 (15-122)||(12909763-12909864)
chr3 (10-120)||(14461007-14461114)
chr3 (148-194)||(30956700-30956746)
chr3 (148-194)||(30972512-30972558)
chr3 (19-117)||(43700235-43700333)
[»] scaffold0638 (1 HSPs)
scaffold0638 (18-107)||(4045-4134)
[»] scaffold0075 (2 HSPs)
scaffold0075 (15-120)||(6843-6949)
scaffold0075 (15-123)||(11455-11562)
[»] scaffold0021 (1 HSPs)
scaffold0021 (54-122)||(109427-109494)
[»] scaffold0263 (1 HSPs)
scaffold0263 (286-348)||(5799-5861)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 125 - 497
Target Start/End: Original strand, 2954322 - 2954700
Alignment:
Q  125 catgacgattgtttgtataaaaactatttctttagctaaagataaaatatagttaaatagtttttgtataacttagaagtttaaaatttgaagggaatat 224  Q
    |||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2954322 catgacaattgcttgtataaaaactatttccttagctaaagataaaatatagttaaatagtttttgtataacttagaagtttaaaatttgaagggaatat 2954421  T
Q  225 ttgcacataaaatttaaatttgagggagatatttactacctaagtttnnnnnnnnnttctctattttccatccctca------aagtcttccattctcct 318  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||         |||| ||||||||||||||||      |||||||||||||||||    
T  2954422 ttgcacataaattttaaatttgagggagatatttaccacctaagtttaaaaaaaaattctttattttccatccctcaaactcaaagtcttccattctcct 2954521  T
Q  319 tccctccaaatctccaaacaaagcctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatca 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2954522 tccctccaaatctccaaacaaagcctaaaagtgagtgtttacttgacttgaggttttcacaacgagttcttggaattcctcaattaagagttgatgatca 2954621  T
Q  419 gaccgaaattttgtttggagtagtgacattaccctaatggtctttgcaaagaattaaatgctttttgtaggaatccttg 497  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2954622 gaccgatattttgtttggagtagtgtcattaccctaatggtctttgcaaagaattaaatgctttttgtaggaatccttg 2954700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 5582514 - 5582407
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| ||||||||| ||||| | ||  ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||    
T  5582514 atccgcaggaaaagcgagaggttctagtaatagctgtgcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagctgggggtggctc 5582415  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  5582414 cgcccctg 5582407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 2978451 - 2978542
Alignment:
Q  343 ctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 434  Q
    |||||||||||||||||||||| |||||||||||   ||||||||||| ||||||||||||||||||||| |||  ||||||||||||||||    
T  2978451 ctaaaagtgagtgtttacttgatttgaggttttcgggaggagttcttgaaattcctcaattaagagttgaggatgggaccgaaattttgttt 2978542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 9047004 - 9047111
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| | |  |||| ||||||||||||||| ||||||||||||||||||||||  |||| |    ||||||||||||||||| ||||||    
T  9047004 atccgcaggaaaagctaaaaattctagtaatggttggacttactacaaagaaagttgaagctgagtctggacactagcccaggctagctgggggtggctc 9047103  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  9047104 cgcccctg 9047111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 354 - 434
Target Start/End: Original strand, 2937676 - 2937756
Alignment:
Q  354 tgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 434  Q
    ||||||||||||||||| ||||||  ||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||    
T  2937676 tgtttacttgacttgagattttcaggaggagttcttgaaattcctcaattaacagttgaggattcgaccgaaattttgttt 2937756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 34188809 - 34188721
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggg-gatggctccgcccctg 122  Q
    ||||| ||||||| ||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| | || |||||||||||    
T  34188809 gttctagtaatggctgggcttgctacaaagaaagttggagctgagcctcggctagtgcccaggctagctgggaggtgactccgcccctg 34188721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 2974212 - 2974303
Alignment:
Q  343 ctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 434  Q
    |||||||||| ||||||| |||||||||||||||   ||||||||||| |||||||||||||| |||| | |||  ||||||||||||||||    
T  2974212 ctaaaagtgaatgtttacatgacttgaggttttcgggaggagttcttgaaattcctcaattaacagttcaagatgggaccgaaattttgttt 2974303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 2929514 - 2929582
Alignment:
Q  343 ctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttg 411  Q
    |||||||| |||||||||||||||| |||||||||  ||||||||||| |||||||||||||| |||||    
T  2929514 ctaaaagtaagtgtttacttgacttaaggttttcaggaggagttcttgaaattcctcaattaacagttg 2929582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 2952141 - 2952205
Alignment:
Q  346 aaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagtt 410  Q
    ||||| |||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||||    
T  2952141 aaagtaagtgtttacttgacttgaggttttcggaaggagttcttgaaattcctcaattaaaagtt 2952205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 10397869 - 10397977
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| |||||||||||  |||||||||||||||||| |||||| |||||||    ||||||||||||| |||| |||||    
T  10397869 atccgcaggaaaagctaaaaattctcgtaatggttgggtttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggct 10397968  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  10397969 ccgcccctg 10397977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 2934804 - 2934895
Alignment:
Q  343 ctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 434  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||| ||||||||||||||  ||||| |||  ||| ||||||| ||||    
T  2934804 ctaaaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaacggttgacgataggactgaaatttcgttt 2934895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 2960723 - 2960642
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccag 96  Q
    ||||||||||||||| | | ||||| ||| ||| ||||||||||||||||||| ||| |||||| ||||||||||| |||||    
T  2960723 atccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcctgggctagtacccag 2960642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 2927368 - 2927432
Alignment:
Q  346 aaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagtt 410  Q
    ||||| |||||||||||||||||||||||||   ||||||||||| |||||||||||||| ||||    
T  2927368 aaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaaaagtt 2927432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 434
Target Start/End: Original strand, 2964717 - 2964805
Alignment:
Q  346 aaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 434  Q
    ||||| |||||||||||||||||||||||||   ||||||||||| |||||||||||||| || | | |||  |||||||||| |||||    
T  2964717 aaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaattaatagctcacgatgggaccgaaattatgttt 2964805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 2983068 - 2983162
Alignment:
Q  343 ctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatc---agaccgaaattttgttt 434  Q
    |||||||| ||||||||  |||||||||||||||   ||||||||||| |||||||||||||| |||| ||||||    ||||||||||||||||    
T  2983068 ctaaaagtaagtgtttatatgacttgaggttttcgggaggagttcttgaaattcctcaattaatagttcatgatcggacgaccgaaattttgttt 2983162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 2836289 - 2836396
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    |||||||| |||||| | | ||||| | |||||||||  |||||||||||||||||| |||| | ||||  |||||||||  | ||||||||| ||||||    
T  2836289 atccgcagaaaaagctaaaagttctaggaatggttgggtttgctacaaagaaagttggagctaaacctgaactagtgcccgagttagctgggggtggctc 2836388  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  2836389 cgcccctg 2836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 339335 - 339266
Alignment:
Q  54 ttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctgat 124  Q
    |||||||||||||||||  ||||||  |||||||| |||||||||||||||||| ||||||||||| ||||    
T  339335 ttgctacaaagaaagttagagctgaatctgggctaatgcccaggctagctgggg-tggctccgcccttgat 339266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 434
Target Start/End: Complemental strand, 2658864 - 2658767
Alignment:
Q  343 ctaaaagtgagtgtttacttgacttgaggttttcaca------aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 434  Q
    |||||||| |||||||||||||||||||||||||| |      ||||||||||| ||||||||||||||  ||||| |||  ||| ||||||||||||    
T  2658864 ctaaaagtaagtgtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaacggttgacgataggactgaaattttgttt 2658767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 346 - 404
Target Start/End: Complemental strand, 3003654 - 3003596
Alignment:
Q  346 aaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaatta 404  Q
    ||||| |||||||||||||||||||||||||   ||||||||||| |||||||||||||    
T  3003654 aaagtaagtgtttacttgacttgaggttttcgggaggagttcttgaaattcctcaatta 3003596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 9696055 - 9695975
Alignment:
Q  42 taatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||| |||| ||||||||||||||||||| ||| || |||||||    ||||||||||||||||| || |||||||||||    
T  9696055 taatgattgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggtgactccgcccctg 9695975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 28614480 - 28614552
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    ||||| ||||||| | | ||||||||||||| | ||| |||||| |||||||||||||||| |||||||||||    
T  28614480 gttctagtaatggctaggcttgctacaaagataattggagctgagcctgggctagtgcccacgctagctgggg 28614552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 14939026 - 14939092
Alignment:
Q  54 ttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggctccgccc 119  Q
    |||||||||||||| ||| |||||| |||| ||||||| ||||||||||| |||| |||||||||||    
T  14939026 ttgctacaaagaaaattggagctgagcctgagctagtgtccaggctagctggggggtggctccgccc 14939092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 34249090 - 34249195
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| ||||||||||| ||||||||||||||||||| || |||  ||||||    ||||| ||||||| |||| |||||    
T  34249090 atccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagttgagtctgggcactagcccaagctagctggggggtggct 34249189  T
Q  114 ccgccc 119  Q
    ||||||    
T  34249190 ccgccc 34249195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 23663864 - 23663928
Alignment:
Q  43 aatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    ||||||||| ||||||||||||||||||| ||| || |||||||    |||||||||||||||||    
T  23663864 aatggttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggg 23663928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 1781125 - 1781207
Alignment:
Q  41 gtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggctccgcccctg 122  Q
    |||||||||||  |||||||||||||||||| ||| || |||||||    |||||| |||||| |||| ||||||||||||||    
T  1781125 gtaatggttgggtttgctacaaagaaagttggagccgaacctgggcactagcccagactagctggggggtggctccgcccctg 1781207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 497
Target Start/End: Original strand, 2974528 - 2974566
Alignment:
Q  459 tctttgcaaagaattaaatgctttttgtaggaatccttg 497  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  2974528 tctttgcaaagaattgaatgcttattgtaggaatccttg 2974566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 497
Target Start/End: Complemental strand, 2996930 - 2996892
Alignment:
Q  459 tctttgcaaagaattaaatgctttttgtaggaatccttg 497  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  2996930 tctttgcaaggacttaaatgctttttgtaggaatccttg 2996892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 8349798 - 8349737
Alignment:
Q  134 tgtttgtataaaaactatttctttagctaaagataaaatatagttaaatagtttttgtataa 195  Q
    ||||||| || ||||||||||| || | |||||||||||| |||||||| |||||| |||||    
T  8349798 tgtttgtgtataaactatttctctaacaaaagataaaataaagttaaattgtttttatataa 8349737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 13694873 - 13694766
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    |||| |||||||||| ||| ||||| ||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  13694873 atccacaggaaaagcgagaagttctagtaatggatgggcttgctacaaagaaagttgaagttgagcctgggctagtgcccaggctagctgggggtggctc 13694774  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  13694773 cgcccctg 13694766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 13695088 - 13694982
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    |||| |||||||||| ||| ||||| ||||||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||    
T  13695088 atccacaggaaaagcgagaagttctagtaatggatgaacttgctacaaagaaagttgaagctgagcctgagctagtgcccaggctagctaggggtggctc 13694989  T
Q  115 cgcccct 121  Q
    |||||||    
T  13694988 cgcccct 13694982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 39605908 - 39606011
Alignment:
Q  19 gcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcc 118  Q
    |||| ||||||||||||||||  |||||| |||||||| |||||||||||| ||||||||  |||||||||||| |||||||||||||| ||||||||||    
T  39605908 gcagaaaaagcaagaggttctaataatggatggacttgttacaaagaaagtagaagctgagtctgggctagtgctcaggctagctgggggtggctccgcc 39606007  T
Q  119 cctg 122  Q
    ||||    
T  39606008 cctg 39606011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 16567829 - 16567721
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||| ||||||| | | ||||| ||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||| |||| |||||    
T  16567829 atccgcaagaaaagctaaaagttctagtaatggctggacttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctggggggtggct 16567730  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  16567729 ccgcccctg 16567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 1672584 - 1672671
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||| |||||||||||  |||||||||||||| ||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  1672584 gttctagtaatggttgggattgctacaaagaaaattggagctgagcctgagctagtgcccaggctagctgggggtggctccgcccctg 1672671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 15503954 - 15503847
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| | |  |||| ||||||||| | ||||||||||||||| |||||| ||| ||||||||||||||||| |||||| ||| ||||||    
T  15503954 atccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaatttgaaggtgagcctgggctagtgcccagactagcttggggtggctc 15503855  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  15503854 cgcccctg 15503847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 43228720 - 43228827
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||| ||||||||| | | ||||| ||||||| ||| ||||||||||||||| ||| || ||| ||| |||||||||||||||||||||||| ||||||    
T  43228720 atccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagccttggctagtgcccaggctagctgggggtggctc 43228819  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  43228820 cgcccctg 43228827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 42989569 - 42989461
Alignment:
Q  18 cgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtg-cccaggctagct-ggggatggctcc 115  Q
    ||||| |||||| ||| ||||| ||||||| ||| |||||  |||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||    
T  42989569 cgcagaaaaagcgagaagttctagtaatggctgggcttgcctcaaagaaagtagaagctgatcctgggctagtgccccaggctagctggggggtggctcc 42989470  T
Q  116 gcccctgat 124  Q
    |||||||||    
T  42989469 gcccctgat 42989461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 37779682 - 37779595
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||| ||||||| || |||||||||||||||| ||| || ||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  37779682 gttctagtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccaggctagctgggggtggctccgcccctg 37779595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 16667571 - 16667653
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccagg 97  Q
    ||||||||||||||| | | ||||| ||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  16667571 atccgcaggaaaagctaaaagttctagtaatggctggacttgctacaaagaaagttggagctgagtctgggctagtgcccagg 16667653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 32953745 - 32953850
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||| ||||||||| | | ||||| ||||||| ||| ||||||||||||||| ||| |||||| ||| |||||||||||||||||||| |||| |||||    
T  32953745 atccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctcggctagtgcccaggctagctggggggtggct 32953844  T
Q  114 ccgccc 119  Q
    ||||||    
T  32953845 ccgccc 32953850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 37607467 - 37607386
Alignment:
Q  41 gtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||||| || |||||||||||||||| ||| || ||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  37607467 gtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccaggctagctgggggtggctccgcccctg 37607386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 9738410 - 9738306
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    |||||||||||| || ||| ||||| ||||||||||| |||||| |||||||||| ||||||||  | |||||||||| ||  |||||||||| ||||||    
T  9738410 atccgcaggaaatgcgagaagttctagtaatggttgggcttgcttcaaagaaagtagaagctgagtcagggctagtgcacaaactagctgggggtggctc 9738311  T
Q  115 cgccc 119  Q
    |||||    
T  9738310 cgccc 9738306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 21069035 - 21068927
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg-atggct 113  Q
    |||||||||||| || | |  |||| ||||||||||| ||| ||||||||||||||  || ||| |||| |||||||||||||||||||||||  |||||    
T  21069035 atccgcaggaaaggctaaaaattctagtaatggttgggcttactacaaagaaagttagagttgagcctgagctagtgcccaggctagctggggtgtggct 21068936  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  21068935 ccgcccctg 21068927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 34444004 - 34443896
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| |||||||| || ||||||||||||||||||| |||||| |||||||    ||||||||||||| |||| |||||    
T  34444004 atccgcaggaaaagctacaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggct 34443905  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  34443904 ccgcccctg 34443896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 35468900 - 35468820
Alignment:
Q  43 aatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctga 123  Q
    ||||||||| ||||||||||||||||||| ||| || |||||||    ||||||||||||||||| |||||||||||||||    
T  35468900 aatggttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggtggctccgcccctga 35468820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 767280 - 767230
Alignment:
Q  73 agctgatcctgggctagtgcccaggctagctggggatggctccgcccctga 123  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  767280 agctgagcctgggctagtgcccaggctagctgggggtggctccgcccctga 767230  T

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Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 13942899 - 13942969
Alignment:
Q  54 ttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggg-gatggctccgcccctga 123  Q
    |||||||||||||||||| | |||| |||||||||||||||||||||| |||| | |||||||||||||||    
T  13942899 ttgctacaaagaaagttggacctgagcctgggctagtgcccaggctagttgggaggtggctccgcccctga 13942969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 36234675 - 36234752
Alignment:
Q  42 taatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgccc 119  Q
    |||||| ||| ||||||||||||||| ||| ||||||  ||||||||||| |||||||| |||||| |||||||||||    
T  36234675 taatggctgggcttgctacaaagaaaattggagctgagtctgggctagtgtccaggctaactgggggtggctccgccc 36234752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 2476442 - 2476350
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    ||||||||||||||| | |  |||| |||||||| |||||||||||||||||| ||| |||||| |||||||    |||||||||||||||||    
T  2476442 atccgcaggaaaagctaaaaattctagtaatggtaggacttgctacaaagaaaattggagctgagcctgggcactagcccaggctagctgggg 2476350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 7162161 - 7162242
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccag 96  Q
    ||||||||||||||| | |  || | ||||||| ||| ||||||||||||||| ||| |||||| |||||||||||||||||    
T  7162161 atccgcaggaaaagctaaaatttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccag 7162242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 30249003 - 30248894
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    |||||||| |||||| | |  |||| ||||| ||||| ||||||||||||||||||| ||| || |||||||    ||||||||||||| |||| |||||    
T  30249003 atccgcagaaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggct 30248904  T
Q  114 ccgcccctga 123  Q
    ||||||||||    
T  30248903 ccgcccctga 30248894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 34846393 - 34846301
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    |||||||||| |||| | |  |||| ||||||||| ||||||||||||||||||||| ||| || |||||||    |||||||||||||||||    
T  34846393 atccgcaggataagctaaaaattctagtaatggtttgacttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggg 34846301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 15675318 - 15675232
Alignment:
Q  36 ttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    |||| |||||||||||  |||| ||||||||||||  ||| || |||||||    ||||||||||||||||| ||||||||||||||    
T  15675318 ttctagtaatggttgggtttgcaacaaagaaagttagagccgagcctgggcactagcccaggctagctgggggtggctccgcccctg 15675232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 17192747 - 17192818
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggc 86  Q
    ||||||||||| ||| | | ||||| ||||||| ||  ||||||||||||||||||| |||||| |||||||    
T  17192747 atccgcaggaagagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcctgggc 17192818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 7159672 - 7159726
Alignment:
Q  20 caggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaag 74  Q
    |||||||||| ||||||||| ||||||| ||  ||||||||||||||||| ||||    
T  7159672 caggaaaagcgagaggttctagtaatggctgagcttgctacaaagaaagtagaag 7159726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 33006907 - 33006841
Alignment:
Q  41 gtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    |||||||||||  |||||||||||||||||| ||| || |||||||    |||||||||||||||||    
T  33006907 gtaatggttgggtttgctacaaagaaagttggagccgagcctgggcattagcccaggctagctgggg 33006841  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 8214711 - 8214800
Alignment:
Q  36 ttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctgatc 125  Q
    |||| ||||||| | |||||| |||||| ||||||| |||| |  |||| ||||||| |||||||||||| | ||| |||||| ||||||    
T  8214711 ttctagtaatggctagacttgttacaaaaaaagttggagctaagtctggactagtgctcaggctagctggaggtggttccgcctctgatc 8214800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 12267487 - 12267587
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    |||| |||||||||| | | ||||| ||||| | | | ||||||||||||||||||| |||| | ||| |  ||||||||| ||||| ||||| ||||||    
T  12267487 atccacaggaaaagctaaaagttctagtaattgctaggcttgctacaaagaaagttggagctaagcctagattagtgcccaagctagttgggggtggctc 12267586  T
Q  115 c 115  Q
    |    
T  12267587 c 12267587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 334 - 434
Target Start/End: Complemental strand, 44813 - 44713
Alignment:
Q  334 aaacaaagcctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgtt 433  Q
    ||||||||||||||||||||||||||||||| |||||||||||| || ||||||||| ||||||||||||||||| |||||||||  | |||||||||||    
T  44813 aaacaaagcctaaaagtgagtgtttacttgatttgaggttttcagaaagagttcttgaaattcctcaattaagagctgatgatcaacctgaaattttgtt 44714  T
Q  434 t 434  Q
    |    
T  44713 t 44713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 434
Target Start/End: Complemental strand, 35119 - 35024
Alignment:
Q  339 aagcctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 434  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||| |||| |||||||| ||||  |||||| |||  ||||||||||||||||    
T  35119 aagcctaaaagtgagtgtttacttgacttggggttttcggaaggagtgcttgaaattcctcgattagaagttgaggatgggaccgaaattttgttt 35024  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 34756718 - 34756598
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||  ||||||||| |||| ||  |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||    
T  34756718 atccgcaggaaaagtgagaggttctagtaacggccggacttgctacaaagaaagtagaagctgagcctgggctagtgcccaggctagctggggggtggct 34756619  T
Q  114 ccgcccctgatcatgacgatt 134  Q
    ||| ||||||| |||| ||||    
T  34756618 ccgtccctgattatgatgatt 34756598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 42152604 - 42152696
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    ||||||||||||||| |||||||||  |||||| |||| |||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||    
T  42152604 atccgcaggaaaagcgagaggttctaataatggctggatttgctacaaagaaagtagaagctgaacctggactagtgcccagactagctgggg 42152696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 4570556 - 4570663
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||| ||||| | || |||| ||||||| ||| ||| ||||||||||||| |||||| | |||||||||||||||| ||||||||||| ||||||    
T  4570556 atccgcaggtaaagcgaaagtttctagtaatggctgggcttactacaaagaaagtagaagctcagcctgggctagtgcccatgctagctgggggtggctc 4570655  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  4570656 cgcccctg 4570663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 304200 - 304291
Alignment:
Q  16 tccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    |||||||||||||| | | ||||| ||||||| ||  ||||||||||||||||||| |||||| | |||||||||||||| |||||||||||    
T  304200 tccgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcttgggctagtgcccaagctagctgggg 304291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 13203806 - 13203696
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| ||||||||||| ||||||||||||||||||| |||||| |||||||    ||||||||||||| |||| |||||    
T  13203806 atccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggct 13203707  T
Q  114 ccgcccctgat 124  Q
    || ||||||||    
T  13203706 ccacccctgat 13203696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 25562962 - 25562890
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggct 87  Q
    ||||||||||||||| | | ||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  25562962 atccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggct 25562890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 33909456 - 33909525
Alignment:
Q  53 cttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||||||||||||||||| |||| |  ||||||||||||||||| |||||| || ||||||||||||||    
T  33909456 cttgctacaaagaaagttggagctaagtctgggctagtgcccaggttagctgagggtggctccgcccctg 33909525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 41114946 - 41115054
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||| | | |  |||| ||||||||||  ||||||||||||||||||| ||| || |||||||    ||||||||||||| ||||||||||    
T  41114946 atccgcaggaaaaactaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggatggct 41115045  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  41115046 ccgcccctg 41115054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 16221078 - 16221153
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagt 90  Q
    ||||||||||||||||||| ||||| ||||||||||  |||| |||| ||||||| ||| |||| |||||||||||    
T  16221078 atccgcaggaaaagcaagaagttctagtaatggttgtgcttgttacacagaaagtagaacctgagcctgggctagt 16221153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 15429217 - 15429140
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgc 92  Q
    ||||| || |||||| ||||||||| |||||| |  ||||||||||||||||||| |||||||| |||| ||||||||    
T  15429217 atccgaagaaaaagcgagaggttctagtaatgatcagacttgctacaaagaaagtagaagctgagcctgagctagtgc 15429140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 28816730 - 28816669
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagct 76  Q
    |||||||| ||||||||||||||||  |||||| |||||||||||||||| |||| ||||||    
T  28816730 atccgcagaaaaagcaagaggttctaataatggctggacttgctacaaagtaagtagaagct 28816669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 41010471 - 41010394
Alignment:
Q  58 tacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctgatcatgacgattg 135  Q
    |||||| ||||||| ||||||  || | |||||||||||||||||||||| |||||||||||| |||| ||| |||||    
T  41010471 tacaaaaaaagttggagctgagtctagactagtgcccaggctagctggggttggctccgccccagatcttgatgattg 41010394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 22572780 - 22572880
Alignment:
Q  18 cgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgc 117  Q
    |||||||||||| | |  |||| ||||||||| | ||||||||||||||||||| |||||| ||||| |    |||||||||||| |||| |||||||||    
T  22572780 cgcaggaaaagctaaatattctagtaatggttaggcttgctacaaagaaagttggagctgagcctggacactagcccaggctagccgggggtggctccgc 22572879  T
Q  118 c 118  Q
    |    
T  22572880 c 22572880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 2475841 - 2475769
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    ||||| ||||||| ||| ||| ||||||||||||||| ||||||  |||| ||||||||||  ||||||||||    
T  2475841 gttctagtaatggctgggcttcctacaaagaaagttggagctgagtctggactagtgcccaaactagctgggg 2475769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 27702062 - 27701998
Alignment:
Q  41 gtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgg 105  Q
    ||||||| |||| ||| |||| ||||||||| |||||| ||| ||||||||||||||||| ||||    
T  27702062 gtaatggctggatttgttacagagaaagttggagctgagcctaggctagtgcccaggctaactgg 27701998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 1270578 - 1270536
Alignment:
Q  286 tattttccatccctcaaagtcttccattctccttccctccaaa 328  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  1270578 tattttctatccctcaaagtctttcattctcctcccctccaaa 1270536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 15651218 - 15651169
Alignment:
Q  73 agctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    |||||| | |||||||||| | ||||||||||||| ||||||||||||||    
T  15651218 agctgagcatgggctagtgtcgaggctagctgggggtggctccgcccctg 15651169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 41759717 - 41759804
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||| ||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  41759717 gttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagctgggggtggctccgcccctg 41759804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 3339230 - 3339321
Alignment:
Q  343 ctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 434  Q
    ||||||||||||||||||||| ||||||||||||   ||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||    
T  3339230 ctaaaagtgagtgtttacttggcttgaggttttcgggaggagttcttgaaattcctcaattaacagttgacgatgggaccgaaattttgttt 3339321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 5991494 - 5991602
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||| | | | ||||| ||||||| ||| ||||||||||||||| ||| || ||| |||||||||||||||||||||||| |||| |||||    
T  5991494 atccgcaggaaaaactaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagcctgggctagtgcccaggctagctggggggtggct 5991593  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  5991594 ccgcccctg 5991602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 815062 - 815155
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggga 108  Q
    ||||| ||||||||| | | ||||| ||||||| | || |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  815062 atccgtaggaaaagctaaaagttctagtaatggctagatttgctacaaagaaagttggagctgagcctgggctagtgcccaggctaactgggga 815155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 30852380 - 30852275
Alignment:
Q  16 tccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctcc 115  Q
    |||||||||||||  | | ||||| ||||||| ||  ||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||     
T  30852380 tccgcaggaaaagttaaaagttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggg-tggctct 30852282  T
Q  116 gcccctg 122  Q
    |||||||    
T  30852281 gcccctg 30852275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 19377395 - 19377319
Alignment:
Q  41 gtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcc 118  Q
    ||||||| |||| ||| |||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||||    
T  19377395 gtaatggctggagttgttacaaagaaagttggagctgagcctgggctagtgcccaagctagctgggg-tggctccgcc 19377319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 22206763 - 22206868
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggg-gatggct 113  Q
    ||||||||||||||| | |  || | ||||||  ||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| | |||||    
T  22206763 atccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggtggtggct 22206862  T
Q  114 ccgccc 119  Q
    ||||||    
T  22206863 ccgccc 22206868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 22227976 - 22227871
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggg-gatggct 113  Q
    ||||||||||||||| | |  || | ||||||  ||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| | |||||    
T  22227976 atccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagctgggtggtggct 22227877  T
Q  114 ccgccc 119  Q
    ||||||    
T  22227876 ccgccc 22227871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 28694148 - 28694236
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggctccgcccctg 122  Q
    ||||| |||||||  | |||||||||||||||||||| |||||| |||||| ||||| ||||||||||| |||||||||| ||||||||    
T  28694148 gttctagtaatggcggaacttgctacaaagaaagttggagctgagcctgggttagtgtccaggctagctgggggatggctacgcccctg 28694236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 35300517 - 35300625
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| |||||||| || ||||||||||||||||||| |||||| |||||||    ||||||||||||| |||| |||||    
T  35300517 atccgcaggaaaagctaaacattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggct 35300616  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  35300617 ccgcccctg 35300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 21932881 - 21932940
Alignment:
Q  41 gtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggcta 100  Q
    ||||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||    
T  21932881 gtaatggttgggcttgctacaaagaaagttggagttgagcctgggctagtgcccaggcta 21932940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 3012336 - 3012279
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttga 72  Q
    ||||||||||||||| | | ||||| ||||||||||| ||||||||||||||||||||    
T  3012336 atccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttga 3012279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 41862396 - 41862503
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||| || |||| |||||| | || ||||||| || | ||||| |||||||||| | ||||||   ||||||||||||||| |||||||||  ||||||    
T  41862396 atccgtagaaaaaacaagagatactagtaatggctgaatttgctgcaaagaaagtaggagctgagtatgggctagtgcccagactagctgggtttggctc 41862495  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  41862496 cgcccctg 41862503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 38129111 - 38129186
Alignment:
Q  45 tggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||||||||||||| || |||||||  |||||| |||| | ||||||||| ||||||||||| ||||||||||||||    
T  38129111 tggttggacttgctataa-gaaagtttgagctgagcctgagttagtgcccatgctagctgggg-tggctccgcccctg 38129186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 25688271 - 25688375
Alignment:
Q  19 gcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggg-gatggctccgc 117  Q
    ||||||||||| | | ||| | ||||||| ||  ||||||||||||||| ||| ||||||  |||||||||| ||||| ||| ||||| | |||||||||    
T  25688271 gcaggaaaagctaaaagttttagtaatggctgagcttgctacaaagaaaattggagctgagtctgggctagtacccagactaactgggtggtggctccgc 25688370  T
Q  118 ccctg 122  Q
    |||||    
T  25688371 ccctg 25688375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 32425271 - 32425327
Alignment:
Q  143 aaaaactatttctttagctaaagataaaatatagttaaatagtttttgtataactta 199  Q
    ||||||||||||  |||||||||||||||| ||||||||| | ||||| ||||||||    
T  32425271 aaaaactatttccgtagctaaagataaaatgtagttaaattgattttgaataactta 32425327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 7873297 - 7873349
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaa 67  Q
    |||||||| |||||| | | ||||| ||||||||||| |||||||||||||||    
T  7873297 atccgcagaaaaagctaaaagttctagtaatggttgggcttgctacaaagaaa 7873349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 6802177 - 6802284
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| ||| ||||| ||||||| ||  ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||    
T  6802177 atccgcaggaaaagcgagaagttctagtaatggctgagcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagctgggggtggctc 6802276  T
Q  115 cgcccctg 122  Q
     |||||||    
T  6802277 tgcccctg 6802284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 11647178 - 11647071
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| ||||||||||||||||| | | ||||||||||||||||| |||| |||  || || |||||| |||||||||||||| ||||||    
T  11647178 atccgcaggaaaagcgagaggttcttgtaatggcttggcttgctacaaagaaagtagaagttgagtctcggatagtgctcaggctagctgggggtggctc 11647079  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  11647078 cgcccctg 11647071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 4774050 - 4773936
Alignment:
Q  10 taaatatccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-gggga 108  Q
    |||||||||||||||||||| | | ||||| ||||||| ||| ||||||||||| ||| ||| || |||  ||||||||||||||||||||||| ||||     
T  4774050 taaatatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaaaaaaattggagttgagtctgggctagtgcccaggctagctgggggg 4773951  T
Q  109 tggctccgcccctga 123  Q
    |||||||||||||||    
T  4773950 tggctccgcccctga 4773936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 44238936 - 44239042
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||| ||||||| | |  |||| ||||||| ||| ||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||    
T  44238936 atccgcaagaaaagctaaaatttctagtaatggctgggctttctacaaagaaagttggagctgagcctgggctagtgcccagactagctgggggtggctc 44239035  T
Q  115 cgcccct 121  Q
    |||||||    
T  44239036 cgcccct 44239042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 14727356 - 14727248
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagc-tggggatggct 113  Q
    ||||||||||||||| | |  |||| ||||||||||||||||||||||||||||||| |||||| |||||||    |||||||||||| ||||| |||||    
T  14727356 atccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggagctgagcctgggcactagcccaggctagcttgggggtggct 14727257  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  14727256 ccgcccctg 14727248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 49898449 - 49898345
Alignment:
Q  19 gcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggctccgc 117  Q
    ||||||||||| | |  |||| ||||||| || ||||| |||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||||||    
T  49898449 gcaggaaaagctaaaacttctagtaatggctgaacttgttacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtggctccgc 49898350  T
Q  118 ccctg 122  Q
    |||||    
T  49898349 ccctg 49898345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 33169359 - 33169462
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| ||||||| | ||||||||||| |||| |||||| ||||| |||||||| | |||| ||||||| ||||||||| ||| ||||||    
T  33169359 atccgcaggaaaagcgagaggttatagtaatggttgggcttgttacaaaaaaagtagaagctgagcttgggttagtgcctaggctagctaggggtggctc 33169458  T
Q  115 cgcc 118  Q
    ||||    
T  33169459 cgcc 33169462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 25007502 - 25007393
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| |||||||| || ||||||||||||||||||| |||||| |||||||    ||||||||||||| |||| |||||    
T  25007502 atccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcattagcccaggctagctggggggtggct 25007403  T
Q  114 ccgcccctga 123  Q
    ||||||||||    
T  25007402 ccgcccctga 25007393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 41751977 - 41751909
Alignment:
Q  47 gttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctcc 115  Q
    ||||||||||||||||||||||| |||| ||   ||||||||||||||||||||||||||| |||||||    
T  41751977 gttggacttgctacaaagaaagtagaagttgcgtctgggctagtgcccaggctagctggggttggctcc 41751909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 24646091 - 24645983
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    |||| |||||||||| | | ||||| |||||||||| | |||||||||||||||||| || ||| |||| ||||||| ||| ||||||| |||| |||||    
T  24646091 atccacaggaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgagctagtgtccatgctagctggggggtggct 24645993  T
Q  114 ccgcccctga 123  Q
    ||||||||||    
T  24645992 ccgcccctga 24645983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 16640366 - 16640426
Alignment:
Q  18 cgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctga 78  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||||||||| ||| ||||    
T  16640366 cgcaggaaaagcgagagattcttgtaatggttggtcttgctacaaagaaagtagaaactga 16640426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 27460734 - 27460626
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||| ||||||| | |  |||| ||||||||||| ||||||||||||||||||| |||||| |||||||    ||||| ||||||| |||| |||||    
T  27460734 atccgcaagaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccatgctagctagggggtggct 27460635  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  27460634 ccgcccctg 27460626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 27584090 - 27584198
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| ||||||||| | ||||||||||||||||||| ||| || |||||||    ||||||||||||| |||| |||||    
T  27584090 atccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagcctgggcgctagcccaggctagctggggggtggct 27584189  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  27584190 ccgcccctg 27584198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 4642142 - 4642225
Alignment:
Q  10 taaatatccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcc 93  Q
    |||| ||||||||||||||| | | ||||| ||||||| || |||||||||||||||||| | |||||| ||||| ||||||||    
T  4642142 taaaaatccgcaggaaaagctaaaagttctagtaatggctgaacttgctacaaagaaagtcggagctgagcctggactagtgcc 4642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 8239313 - 8239210
Alignment:
Q  19 gcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcc 118  Q
    ||||||||||| | |  |||| |||||||| ||  || ||||||||||||||| |||||| |||||||    ||||||||||||||||| ||||||||||    
T  8239313 gcaggaaaagctaaaaattctagtaatggtagggattactacaaagaaagttggagctgagcctgggcactagcccaggctagctgggggtggctccgcc 8239214  T
Q  119 cctg 122  Q
    ||||    
T  8239213 cctg 8239210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 4163442 - 4163388
Alignment:
Q  53 cttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    ||||||| ||||||||||| |||| | ||||||||||||||||||||||||||||    
T  4163442 cttgctataaagaaagttggagctaaacctgggctagtgcccaggctagctgggg 4163388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 25011613 - 25011682
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgg 84  Q
    ||||||||||||||| | |  |||| ||||||||||| ||||||||||||||||||| |||||| |||||    
T  25011613 atccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgg 25011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 37154067 - 37154176
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| |||||||| |  ||| ||||||||||||||| |||||| |||||||    ||||||||||||| |||| |||||    
T  37154067 atccgcaggaaaagctaaaaattctagtaatggtagagcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggct 37154166  T
Q  114 ccgcccctga 123  Q
    ||||||||||    
T  37154167 ccgcccctga 37154176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 33469018 - 33469121
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| | |  |||| |||||||||| | |||||| ||||||||||| |||||| ||| |||    ||||||||||||||||| ||||||    
T  33469018 atccgcaggaaaagctaaaatttctagtaatggttgaatttgctataaagaaagttggagctgagcctaggcactagcccaggctagctgggg-tggctc 33469116  T
Q  115 cgccc 119  Q
    |||||    
T  33469117 cgccc 33469121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 44305450 - 44305342
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| ||||| || || ||| ||||||||||||||| |||||| |||||||    ||||||||||||| |||| |||||    
T  44305450 atccgcaggaaaagctaaaaattctagtaattgtagggcttcctacaaagaaagttggagctgagcctgggcactagcccaggctagctggggggtggct 44305351  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  44305350 ccgcccctg 44305342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 9527083 - 9527012
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggc 86  Q
    ||||||||||||||| | | ||||| ||||||| ||| ||||||||||||||||||| |||||  |||||||    
T  9527083 atccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgggcctgggc 9527012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 37574955 - 37574864
Alignment:
Q  31 agaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||||||| ||||||| |  |||||||| ||||||||| |||| |||  |||| |||||| |||| |||| ||||| ||||||||||||||    
T  37574955 agaggttctagtaatggctatacttgctataaagaaagtagaagttgagtctggactagtgtccagactaggtgggggtggctccgcccctg 37574864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 6331710 - 6331605
Alignment:
Q  17 ccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccg 116  Q
    ||||||||||||| | |  |||| ||||||||||   |||||||| ||||||||| ||| || |||||||    ||||||||||||||||| ||||||||    
T  6331710 ccgcaggaaaagctaaaatttctagtaatggttgagtttgctacatagaaagttggagccgagcctgggcactagcccaggctagctgggg-tggctccg 6331612  T
Q  117 cccctga 123  Q
    |||||||    
T  6331611 cccctga 6331605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 13809949 - 13809994
Alignment:
Q  149 tatttctttagctaaagataaaatatagttaaatagtttttgtata 194  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||    
T  13809949 tatttctttagcaaaagataaaataaagttaaattgtttttgtata 13809994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 24745398 - 24745334
Alignment:
Q  58 tacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    |||||||||||||| ||||||  |||||||||| ||||| |||  ||||| ||||||||||||||    
T  24745398 tacaaagaaagttggagctgagactgggctagtacccagactaattgggggtggctccgcccctg 24745334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 7028239 - 7028289
Alignment:
Q  145 aaactatttctttagctaaagataaaatatagttaaatagtttttgtataa 195  Q
    ||||||||||| |||| |||||||||||| |||||| | ||||||||||||    
T  7028239 aaactatttctatagcaaaagataaaataaagttaagttgtttttgtataa 7028289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 24915174 - 24915125
Alignment:
Q  145 aaactatttctttagctaaagataaaatatagttaaatagtttttgtata 194  Q
    ||||||||||| ||||  ||||||||||| |||||||| |||||||||||    
T  24915174 aaactatttctatagcagaagataaaataaagttaaattgtttttgtata 24915125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 21138135 - 21138245
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||||| ||||| ||| |||| | ||||||| |||| |||||    
T  21138135 atccgcaggaaaagcaagaggttctagtaatggttaggcttgctacaaagaaagtagaagctgagcctggactaatgcctatgctagctggggggtggct 21138234  T
Q  114 ccgcccctgat 124  Q
    |||||||||||    
T  21138235 ccgcccctgat 21138245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 34282974 - 34283081
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||| ||||||| | | ||||| ||||||  ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||    
T  34282974 atccgcaagaaaagctaaaagttctagtaatgactggacttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagctggggggtggct 34283073  T
Q  114 ccgcccct 121  Q
    ||||||||    
T  34283074 ccgcccct 34283081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 12478171 - 12478081
Alignment:
Q  17 ccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    ||||||||||||  ||||||||| | ||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  12478171 ccgcaggaaaagagagaggttctagcaatagatggacttgctacaaagaaagtagaagttgatcctgggctagtgcccaggctagctgggg 12478081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 38214802 - 38214689
Alignment:
Q  10 taaatatccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-gggga 108  Q
    |||| ||||||||||||||| | | ||||| ||| ||| ||||||||||||||||||| ||| |||||| || ||||||||||||||||||||| ||||     
T  38214802 taaaaatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcccgggctagtgcccaggctagctgggggg 38214703  T
Q  109 tggctccgcccctg 122  Q
    ||||||||||||||    
T  38214702 tggctccgcccctg 38214689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 27321922 - 27322034
Alignment:
Q  10 taaatatccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggat 109  Q
    |||| ||||||||||||| | | | ||| | ||||||| ||| ||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||| |    
T  27321922 taaaaatccgcaggaaaaactaaaagttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggcaagtgcccaggctagctgggggt 27322021  T
Q  110 ggctccgcccctg 122  Q
    |||||||||||||    
T  27322022 ggctccgcccctg 27322034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 8968368 - 8968276
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    |||||||| |||||  | ||||||| ||||||| |||||||||||||||| |||| ||||||||  ||||||||||||| |||||||||||||    
T  8968368 atccgcagaaaaagtgataggttctagtaatggctggacttgctacaaaggaagtagaagctgagtctgggctagtgcctaggctagctgggg 8968276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 24965071 - 24964961
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggg-gatggct 113  Q
    ||||||||||||||| | |  |||| ||||||||||| ||||||||||||||||||| ||| || |||||||    |||||||||||||||| | |||||    
T  24965071 atccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggtggtggct 24964972  T
Q  114 ccgcccctgat 124  Q
    |||||| ||||    
T  24964971 ccgcccatgat 24964961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 39431790 - 39431843
Alignment:
Q  54 ttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    |||||||||||||||||| |||||| || |||||||||||||||||||||||||    
T  39431790 ttgctacaaagaaagttggagctgagcccgggctagtgcccaggctagctgggg 39431843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 28928096 - 28927989
Alignment:
Q  16 tccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctcc 115  Q
    |||||||||||||| | |  |||| ||||||||| | ||||||||||||||||||| ||| || |||||||    ||||||  ||||||||| |||||||    
T  28928096 tccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaagttggagccgagcctgggcactagcccagaatagctgggggtggctcc 28927997  T
Q  116 gcccctga 123  Q
    ||||||||    
T  28927996 gcccctga 28927989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 3384135 - 3384211
Alignment:
Q  42 taatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcc 118  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||     |||||||||||||| | ||||||||||    
T  3384135 taatggtaggacttgctacaaagaaagttggagctgagcctgggcactaacccaggctagctggaggtggctccgcc 3384211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 34336235 - 34336293
Alignment:
Q  286 tattttccatccctcaaagtcttccattctccttccctccaaatctc-caaacaaagcct 344  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  34336235 tattttccacccctcaaagtcttccattctcctcccctccaaa-ctcacaaacaaagcct 34336293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 36336722 - 36336659
Alignment:
Q  208 aaatttgaagggaatatttgcacataaaatttaaatttgagggagatatttactacctaagttt 271  Q
    |||||||||||| ||||||||||||||| ||| |||||||||| | ||||| |||| |||||||    
T  36336722 aaatttgaaggggatatttgcacataaattttgaatttgagggtggtatttgctacataagttt 36336659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 376439 - 376381
Alignment:
Q  49 tggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    |||||||| || ||||||||| | |||||| || |||||||||||||||||||||||||    
T  376439 tggacttggtataaagaaagtagcagctgagcccgggctagtgcccaggctagctgggg 376381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 36406604 - 36406686
Alignment:
Q  41 gtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggctccgcccctg 122  Q
    |||||| |||| ||||||||||||||||||| ||| || |||||||    ||||||||||||| |||| ||||||||||||||    
T  36406604 gtaatgtttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgcccctg 36406686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 13243057 - 13243025
Alignment:
Q  88 agtgcccaggctagctggggatggctccgcccc 120  Q
    |||||||||||||||||||| ||||||||||||    
T  13243057 agtgcccaggctagctgggggtggctccgcccc 13243025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 50383927 - 50383819
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | | ||||| ||||||| ||| ||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||| |||||    
T  50383927 atccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggccagtgcccaggctagctggggggtggct 50383828  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  50383827 ccgcccctg 50383819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 15034554 - 15034658
Alignment:
Q  19 gcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggctccgc 117  Q
    ||||||||||| | | ||||| ||||||||||| |||| ||||||||||||||||||||| | |||||||||||||||||||| | |||| |||||||||    
T  15034554 gcaggaaaagcgaaaagttctagtaatggttgggcttgttacaaagaaagttgaagctgagcttgggctagtgcccaggctagttggggggtggctccgc 15034653  T
Q  118 ccctg 122  Q
    |||||    
T  15034654 ccctg 15034658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 32828250 - 32828146
Alignment:
Q  19 gcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg-atggctccgc 117  Q
    ||||||||||| | | ||||| |||||||||||  || ||||||||||| ||| |||||| ||||||||||||||||||||||||||||  |||||||||    
T  32828250 gcaggaaaagctaaaagttctagtaatggttgggattactacaaagaaaattggagctgagcctgggctagtgcccaggctagctggggtttggctccgc 32828151  T
Q  118 ccctg 122  Q
    |||||    
T  32828150 ccctg 32828146  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 1585744 - 1585642
Alignment:
Q  19 gcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcc 118  Q
    ||||||||||| | |  |||| |||||||| || |||||||||||||||||||||||||| |||||||    ||||||||||||||||| ||||||||||    
T  1585744 gcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgaagctgagcctgggcactagcccaggctagctgggggtggctccgcc 1585645  T
Q  119 cct 121  Q
    |||    
T  1585644 cct 1585642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 2576177 - 2576091
Alignment:
Q  36 ttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    |||||||||||||||| ||||||||||||||||||| |||||| |||||||    |||||| |||||||||| ||||||||||||||    
T  2576177 ttcttgtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccagactagctggggttggctccgcccctg 2576091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 6017155 - 6017046
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    |||||||| |||||| | | ||||| ||||| || || ||||||||||||||||| |||| ||| |||||||||||||||| ||||||| |||| |||||    
T  6017155 atccgcagaaaaagcgacaagttctagtaatagtcgggcttgctacaaagaaagtagaagttgagcctgggctagtgcccatgctagctagggggtggct 6017056  T
Q  114 ccgcccctga 123  Q
    ||||||||||    
T  6017055 ccgcccctga 6017046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 40969263 - 40969154
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  ||||  ||||||||||||||||||||||||||||||||||||| |||| ||    ||||||||||||| |||||| |||    
T  40969263 atccgcaggaaaagctaaaaattctcataatggttggacttgctacaaagaaagttgaagctgagcctgagcactagcccaggctagctgggggatagct 40969164  T
Q  114 ccgcccctga 123  Q
    ||||||||||    
T  40969163 ccgcccctga 40969154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 41972514 - 41972622
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct--ggggatggc 112  Q
    ||||||||||||||| | | ||||| ||||||||| | ||||||||||||||||||| |||||| |||  |||||||||||| ||||||  |||| ||||    
T  41972514 atccgcaggaaaagctaaaagttctagtaatggttcggcttgctacaaagaaagttggagctgagcctaagctagtgcccagcctagctgggggggtggc 41972613  T
Q  113 tccgcccct 121  Q
    |||||||||    
T  41972614 tccgcccct 41972622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 25237583 - 25237495
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggctccgcccctg 122  Q
    ||||| ||||||  ||||||| ||||||||||||||| |||||| ||||||||||||| |||||||||| |||| ||||||||||||||    
T  25237583 gttctagtaatgactggacttactacaaagaaagttggagctgagcctgggctagtgctcaggctagctggggggtggctccgcccctg 25237495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 9003575 - 9003488
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||||||||||  ||| ||||||||||||||| ||| |||||| ||||| |||||||| ||||||||||||| ||||| ||||||||    
T  9003575 gttcttgtaatgactgggcttgctacaaagaaaattggagctgagcctggactagtgcctaggctagctgggggtggctacgcccctg 9003488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 31364174 - 31364067
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||| | | |  |||| |||||||||||| |||||||||||||||||| ||| || |||||||    ||||||||||||||||| ||||||    
T  31364174 atccgcaggaaaaactaaaatttctagtaatggttggatttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctgggggtggctc 31364075  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  31364074 cgcccctg 31364067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 32005953 - 32005846
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| | |  ||||  ||||||| || ||||||||||||||||||| |||||| |||||||    ||||||||||||||||| ||||||    
T  32005953 atccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctgggggtggctc 32005854  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  32005853 cgcccctg 32005846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 52373731 - 52373668
Alignment:
Q  61 aaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctgat 124  Q
    ||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||||||    
T  52373731 aaagaaagttggagctgagcctgggctagtgcccagactagctgggggtggctccgcccctgat 52373668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 9809812 - 9809723
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctgat 124  Q
    ||||||||||||| ||||||||||||||||||||||  |||| | |||||| |||||| ||||| || ||||| |||||||||| |||||    
T  9809812 gttcttgtaatggctggacttgctacaaagaaagtttgagctaagcctgggttagtgctcaggcaagatgggggtggctccgcctctgat 9809723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 31929120 - 31929229
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| || | |||| |||||| |||| |||||||||||||||||  ||||| |  || |||||| ||||||||||||||||| ||| ||    
T  31929120 atccgcaggaaaagcgagggattctagtaatgattgggcttgctacaaagaaagtaaaagctaagtcttggctagcgcccaggctagctgggggtggttc 31929219  T
Q  115 cgcccctgat 124  Q
    ||||| ||||    
T  31929220 cgcccttgat 31929229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 49745057 - 49744972
Alignment:
Q  36 ttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccct 121  Q
    |||| ||||||| | |||||| || ||||||||||| |||||| ||||| ||||||||||| |||||||||| |||||||||||||    
T  49745057 ttctagtaatggctagacttgttataaagaaagttggagctgagcctggactagtgcccagactagctggggttggctccgcccct 49744972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 8901814 - 8901735
Alignment:
Q  43 aatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||| ||| ||| ||||||||||||||| |||||| ||||||||||||||||| | |||||| | ||||||||||||||    
T  8901814 aatggctgggctttctacaaagaaagttggagctgagcctgggctagtgcccagacaagctggcggtggctccgcccctg 8901735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 36947520 - 36947447
Alignment:
Q  49 tggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||||||||||||||||||| | |||||| | || ||||||||| | ||||||||||| ||||||||||||||    
T  36947520 tggacttgctacaaagaaagtaggagctgagcttgagctagtgcctaagctagctggggttggctccgcccctg 36947447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 4552224 - 4552132
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    ||||||||||||||| | |  |||| |||||||| || ||||||||||||||||||| |||||| |||||||    |||||||||||||||||    
T  4552224 atccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctgggg 4552132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 9694106 - 9694019
Alignment:
Q  35 gttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||| ||||||| ||  ||| ||||||||||| ||| |||||| ||||||||||||| |||||||||||| | || |||||||||||    
T  9694106 gttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcacaggctagctggaggtgactccgcccctg 9694019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 10715694 - 10715585
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgc-tacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggc 112  Q
    ||||||||||||||| | |  |||| ||||||||||| ||||| |||||||||||||| ||| || |||||||    ||||||||||||| |||| ||||    
T  10715694 atccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggc 10715595  T
Q  113 tccgcccctg 122  Q
    ||||||||||    
T  10715594 tccgcccctg 10715585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 10929464 - 10929355
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgc-tacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggc 112  Q
    ||||||||||||||| | |  |||| ||||||||||| ||||| |||||||||||||| ||| || |||||||    ||||||||||||| |||| ||||    
T  10929464 atccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggc 10929365  T
Q  113 tccgcccctg 122  Q
    ||||||||||    
T  10929364 tccgcccctg 10929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 2017514 - 2017622
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| |||||||| |  ||||||||||||||||||| |||| | |||||||    ||||||||||||| |||| |||||    
T  2017514 atccgcaggaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttggagctaagcctgggcactagcccaggctagctggggggtggct 2017613  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  2017614 ccgcccctg 2017622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 11827103 - 11827195
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    |||||||| |||||| | | ||||| ||||||| | ||||| ||||||||||| ||| |||||| ||||||||||| |||| |||| ||||||    
T  11827103 atccgcagaaaaagctaaaagttctagtaatggctagacttactacaaagaaaattggagctgagcctgggctagtacccatgctaactgggg 11827195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 4728585 - 4728475
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| ||||||||| | ||||||||||||||||||| ||| ||  ||||||    ||||| ||||||| |||| |||||    
T  4728585 atccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagtctgggcactagcccaagctagctggggggtggct 4728486  T
Q  114 ccgcccctgat 124  Q
    |||||||||||    
T  4728485 ccgcccctgat 4728475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 46645630 - 46645559
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggc 86  Q
    |||||||| |||||| | |  |||| ||||||||||| |||||||||||| |||||| |||||| |||||||    
T  46645630 atccgcagaaaaagctaaaaattctagtaatggttgggcttgctacaaaggaagttggagctgagcctgggc 46645559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 14044384 - 14044279
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  || | ||||||| | | ||||||||||||||| ||| ||||||  ||| |||||||||||  |||||| |||| |||||    
T  14044384 atccgcaggaaaagctaaaaattttcgtaatggcttggcttgctacaaagaaaattggagctgagactgagctagtgcccaaactagctggggggtggct 14044285  T
Q  114 ccgccc 119  Q
    ||||||    
T  14044284 ccgccc 14044279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 3155553 - 3155597
Alignment:
Q  148 ctatttctttagctaaagataaaatatagttaaatagtttttgta 192  Q
    |||||||| |||| |||||||||||| |||||||| |||||||||    
T  3155553 ctatttctatagcaaaagataaaataaagttaaattgtttttgta 3155597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 21101 - 21183
Alignment:
Q  41 gtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggga-tggctccgcccctg 122  Q
    ||||||| ||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  21101 gtaatggctgggcttgtaacaaagaaagttgaagctgagcctgggctagtgcccaggctagctggggattggctccgcccctg 21183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 41218460 - 41218569
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | | ||||| ||||||| ||| |||||||||| |||||| | |||||| ||||||||||||| |||||||||| |||| |||||    
T  41218460 atccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaggaaagtcggagctgagcctgggctagtgctcaggctagctggggggtggct 41218559  T
Q  114 ccgcccctga 123  Q
    ||||||||||    
T  41218560 ccgcccctga 41218569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 9600399 - 9600287
Alignment:
Q  10 taaatatccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggat 109  Q
    |||| ||||||||||||||| | | ||||| ||||||| |||  || ||||||||||| | | |||||| | |||||||||||||||||||||||||| |    
T  9600399 taaaaatccgcaggaaaagccaaaagttctagtaatggctgggattactacaaagaaaataggagctgagcttgggctagtgcccaggctagctgggggt 9600300  T
Q  110 ggctccgcccctg 122  Q
    |||||||||||||    
T  9600299 ggctccgcccctg 9600287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 37516674 - 37516567
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| | |  |||| ||||||||||||||||||||||||||||||| | | || |||||||    ||||||||||||||||| ||||||    
T  37516674 atccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggaaccgagcctgggcactagcccaggctagctgggggtggctc 37516575  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  37516574 cgcccctg 37516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 53651942 - 53651835
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| | |  |||| |||||||| || ||||||||||||||||||| |||||| |||||||    ||||||||||||||||| ||||||    
T  53651942 atccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagcccaggctagctgggggtggctc 53651843  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  53651842 cgcccctg 53651835  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 33179204 - 33179306
Alignment:
Q  18 cgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggctccg 116  Q
    |||||||||||| | | ||||| ||||||| ||||||||||||||| ||||||| |||||| |||  ||||||||||||||||| | |||||||||||||    
T  33179204 cgcaggaaaagctaaaagttctagtaatggctggacttgctacaaaaaaagttggagctgagcctaagctagtgcccaggctagttgggggatggctccg 33179303  T
Q  117 ccc 119  Q
    |||    
T  33179304 ccc 33179306  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 41199967 - 41200077
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||  ||||||||| ||||| | ||| ||| ||||||| ||||| |||||||| ||||||||||||| ||||||| || |||| |||||    
T  41199967 atccgcaggaaaaggcagaggttctagtaattgctgggcttactacaaaaaaagtagaagctgagcctgggctagtgctcaggctaactggggggtggct 41200066  T
Q  114 ccgcccctgat 124  Q
    |||||||||||    
T  41200067 ccgcccctgat 41200077  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 53987913 - 53987800
Alignment:
Q  10 taaatatccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctg-ggga 108  Q
    |||| ||||||||||||||| | | ||||| ||||||||||  ||  ||||||||||| |||||||||| ||||| |||||||||| |||||||| |||     
T  53987913 taaaaatccgcaggaaaagctaaaagttctagtaatggttgagctgactacaaagaaaattgaagctgagcctggactagtgcccaagctagctgagggg 53987814  T
Q  109 tggctccgcccctg 122  Q
    ||||||||||||||    
T  53987813 tggctccgcccctg 53987800  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 26278395 - 26278289
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||| ||||||| | |  |||| ||||||| | | |||||| |||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||    
T  26278395 atccgcatgaaaagctaaaaattctagtaatggctaggcttgctccaaagaaaattggagctgagcctgggctagtgcccaggctagctgggg-tggctc 26278297  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  26278296 cgcccctg 26278289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 41358704 - 41358805
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||| ||||||||| ||| |||||  |||||||||   |||||||||||||||| ||||||||  |||| |||| ||||||||||||||||| ||||||    
T  41358704 atccgtaggaaaagcgagaagttctaataatggttgagtttgctacaaagaaagtagaagctgagtctggactagcgcccaggctagctgggggtggctc 41358803  T
Q  115 cg 116  Q
    ||    
T  41358804 cg 41358805  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 38239488 - 38239388
Alignment:
Q  24 aaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctga 123  Q
    |||||| ||||||| | ||||||| || |||||||||||||| |||  ||| ||| ||||| | |||||||||| ||||||||| |||||||||||||||    
T  38239488 aaaagcgagaggttatagtaatggctgaacttgctacaaagatagtaaaagttgagcctggacgagtgcccaggttagctgggggtggctccgcccctga 38239389  T
Q  124 t 124  Q
    |    
T  38239388 t 38239388  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 49613641 - 49613732
Alignment:
Q  343 ctaaaagtgagtgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 434  Q
    |||||||||||||||||||||| ||||||||||||  | | ||||||| |||||||||||| | |||||| |||  ||| ||||||||||||    
T  49613641 ctaaaagtgagtgtttacttgatttgaggttttcaggacgggttcttgaaattcctcaattgaaagttgaggattggactgaaattttgttt 49613732  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 44047628 - 44047520
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagt-gcccaggctagct-ggggatggc 112  Q
    ||||||||||||||| | |  |||| |||||||| || ||||||||||||||||||| |||||| |||||| || | ||||||||||||| |||| ||||    
T  44047628 atccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctggg-tactagcccaggctagctggggggtggc 44047530  T
Q  113 tccgcccctg 122  Q
    ||||||||||    
T  44047529 tccgcccctg 44047520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 25391901 - 25392009
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| |||||||| || |||||||| |||||||||| |||||| |||||||    ||||||||||||| |||| |||||    
T  25391901 atccgcaggaaaagctaaaaattctagtaatggtagggcttgctacgaagaaagttggagctgagcctgggcattagcccaggctagctggggggtggct 25392000  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  25392001 ccgcccctg 25392009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 47511721 - 47511826
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    ||||||||||||||| | ||||||| ||||||| |||||||| |||||||||| | ||||||||  |||| |||||| ||| |||||| |||| || |||    
T  47511721 atccgcaggaaaagcgaaaggttctagtaatggctggacttgttacaaagaaattagaagctga-gctggactagtgtccatgctagccgggg-tgtctc 47511818  T
Q  115 cgcccctg 122  Q
    ||||||||    
T  47511819 cgcccctg 47511826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 49618640 - 49618723
Alignment:
Q  354 tgtttacttgacttgaggttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgtttgga 437  Q
    |||||||||||||||||||||||   | ||||||||| ||||||||||||||||||||| || | ||||| || ||| ||||||    
T  49618640 tgtttacttgacttgaggttttccggacgagttcttgaaattcctcaattaagagttgaggaccggaccgtaactttatttgga 49618723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 7500988 - 7500915
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggcta 88  Q
    ||||||||||||||| | |  |||| ||||||||||| ||||||||||||||||||| ||| || |||||||||    
T  7500988 atccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggcta 7500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 54846068 - 54845987
Alignment:
Q  41 gtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    ||||||| || |||||||||||||||||| |||| |||  ||||||||||| ||| ||||||||||| ||| ||| ||||||    
T  54846068 gtaatggatgaacttgctacaaagaaagtagaagttgagtctgggctagtgtccaagctagctgggggtggttccacccctg 54845987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 43447571 - 43447476
Alignment:
Q  21 aggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccc 120  Q
    ||||||||| ||||||||| ||||||     |||||||||||| ||||| ||| |||| |||| |||||||||||||||| ||| || |||||||| |||    
T  43447571 aggaaaagcgagaggttctggtaatg-----acttgctacaaaaaaagtagaaactgagcctgagctagtgcccaggctaactgagggtggctccgtccc 43447477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 44625738 - 44625634
Alignment:
Q  19 gcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggctccgc 117  Q
    ||||||||||| | |  |||| ||||| ||||| ||||||||||||||||||| ||| || |||||||    ||||||||||||| |||| |||||||||    
T  44625738 gcaggaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggcactagcccaggctagctggggggtggctccgc 44625639  T
Q  118 ccctg 122  Q
    |||||    
T  44625638 ccctg 44625634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 12909864 - 12909763
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagct-ggggatggct 113  Q
    ||||||||||||||| | |  |||| |||||||| || ||||||||||||||||||| |||||| ||||       ||||||||||||| |||| |||||    
T  12909864 atccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctg-------gcccaggctagctggggggtggct 12909772  T
Q  114 ccgcccctg 122  Q
    |||||||||    
T  12909771 ccgcccctg 12909763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 14461114 - 14461007
Alignment:
Q  10 taaatatccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggat 109  Q
    |||| ||||||||||||||  | |  |||| |||||||| || ||||||||||||||| ||| |||||| |||||||    ||||||||| |||||||      
T  14461114 taaaaatccgcaggaaaagttaaaaattctagtaatggtagggcttgctacaaagaaaattggagctgagcctgggc---agcccaggctcgctggggga 14461018  T
Q  110 ggctccgcccc 120  Q
    |||||||||||    
T  14461017 ggctccgcccc 14461007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 30956746 - 30956700
Alignment:
Q  148 ctatttctttagctaaagataaaatatagttaaatagtttttgtata 194  Q
    |||||||| |||| |||||||||||| |||||||| |||||||||||    
T  30956746 ctatttctatagcaaaagataaaataaagttaaattgtttttgtata 30956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 30972558 - 30972512
Alignment:
Q  148 ctatttctttagctaaagataaaatatagttaaatagtttttgtata 194  Q
    |||||||| |||| |||||||||||| |||||||| |||||||||||    
T  30972558 ctatttctatagcaaaagataaaataaagttaaattgtttttgtata 30972512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 43700235 - 43700333
Alignment:
Q  19 gcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgc 117  Q
    ||||||||||| | |  |||| ||||||||||| ||||||||||||||||||| ||| || |||| ||    | |||||||| |||||| |||||||||    
T  43700235 gcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgagcactagtccaggctaactgggggtggctccgc 43700333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 4134 - 4045
Alignment:
Q  18 cgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctgggg 107  Q
    |||||||||||| | | ||||| ||||||| ||| ||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  4134 cgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctaactgggg 4045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 6949 - 6843
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagc-tggggatggct 113  Q
    ||||||||||||||| | |  |||| |||||||| || ||||||||||||||||||| |||| |  |||||||||||||||||||||| |||||  ||||    
T  6949 atccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctaagtctgggctagtgcccaggctagcttgggggaggct 6850  T
Q  114 ccgcccc 120  Q
    |||||||    
T  6849 ccgcccc 6843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 11562 - 11455
Alignment:
Q  15 atccgcaggaaaagcaagaggttcttgtaatggttggacttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctc 114  Q
    |||||||||||||| || |  |||| |||||||| || ||||||||||||||||||| |||||| |||||||    | ||||||||||||||| ||||||    
T  11562 atccgcaggaaaagaaaaaa-ttctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggcactagtccaggctagctgggggtggctc 11464  T
Q  115 cgcccctga 123  Q
    |||||||||    
T  11463 cgcccctga 11455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 109427 - 109494
Alignment:
Q  54 ttgctacaaagaaagttgaagctgatcctgggctagtgcccaggctagctggggatggctccgcccctg 122  Q
    |||||||||||||||||| |||||| ||||| |||||||||| ||||||||||| ||||||| ||||||    
T  109427 ttgctacaaagaaagttggagctgagcctggactagtgcccaagctagctgggg-tggctccacccctg 109494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 5861 - 5799
Alignment:
Q  286 tattttccatccctcaaagtcttccattctccttccctccaaatctccaaacaaagcctaaaa 348  Q
    ||||||||| ||||||||||||||| |||  ||||||||||||   ||||||||| |||||||    
T  5861 tattttccacccctcaaagtcttcccttcctcttccctccaaactcccaaacaaaacctaaaa 5799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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