View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_10 (Length: 472)
Name: NF14494_low_10
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Complemental strand, 4982638 - 4982183
Alignment:
| Q |
17 |
aatagaacaaagagaataacaccacaagaccaaatatctgccttggctccatcataacctttcttcctgataatctcaggtgctacataagctggagtac |
116 |
Q |
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| T |
4982638 |
aatagaacaaagagaataacaccacaagaccaaatatctgccttggctccatcataacctttcttcctgataatctcaggtgctacataagctggagtac |
4982539 |
T |
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| Q |
117 |
cgcatgttgtatgaagaagatcgtctttcttttttgattccaacaatgcactaagaccaaaatcagcaactttaaggttaccattttcgtcaaggagaag |
216 |
Q |
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| T |
4982538 |
cgcatgttgtatgaagaagatcgtcttttttttttgattccaacaatgcactaagaccaaaatcagcaactttaaggttaccattttcgtcgaggagaag |
4982439 |
T |
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| Q |
217 |
attttctggtttaaggtcgcgatgataaatccctcttctatgacaatgatcaacagctgcaataagttgctggaaatatttcctagccatatcttccctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4982438 |
attttctggtttaaggtcgcgatgataaatccctcttctatgacaatgatcaacagctgcaataagttgctggaaatatttcctagccatatcttccctc |
4982339 |
T |
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| Q |
317 |
agcttccctcgagacactttatggaaaagctcgccacctttcacttgttccattgcaaaatatatctttgttttgcttgccatgacctcgtagaattcga |
416 |
Q |
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| T |
4982338 |
agcttccctcgagacactttatggaaaagctcgccacctttcacttgttccattgcaaaatatatctttgttttgcttgccatgacctcgtagaattcga |
4982239 |
T |
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| Q |
417 |
caatgttagggtgtcgaacaagacgcataaccgagatttcacgcttgatttgctcc |
472 |
Q |
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| T |
4982238 |
caatgttagggtgtcgaacaagacgcataaccgagatttcacgcttgatttgctcc |
4982183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 45268263 - 45268353
Alignment:
| Q |
24 |
caaagagaataacaccacaagaccaaatatctgccttggctccatcataacctttcttcctgataatctcaggtgctacataagctggagt |
114 |
Q |
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|||| |||||||||||||||||||||||||| || || | |||||||||||| ||||| | | || |||||||| |||||||| ||||| |
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| T |
45268263 |
caaaaagaataacaccacaagaccaaatatcagcttttgatccatcataaccaatcttcttcaaaacttcaggtgcaacataagcaggagt |
45268353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 54659765 - 54659665
Alignment:
| Q |
29 |
agaataacaccacaagaccaaatatctgccttggctccatcataacctttcttcctgataatctcaggtgctacataagctggagtaccgcatgttgtat |
128 |
Q |
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| T |
54659765 |
agaataacaccacaagaccaaatatcagccttagcaccgtcgtaacccttcttcgcgataacctccggcgaaacatacgccggagtaccacatgtggtat |
54659666 |
T |
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| Q |
129 |
g |
129 |
Q |
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| T |
54659665 |
g |
54659665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 35828073 - 35828027
Alignment:
| Q |
164 |
gcactaagaccaaaatcagcaactttaaggttaccattttcgtcaag |
210 |
Q |
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| T |
35828073 |
gcactaagaccaaaatctgaaactttaaggttacctttttcatcaag |
35828027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 31903930 - 31903992
Alignment:
| Q |
20 |
agaacaaagagaataacaccacaagaccaaatatctgccttggctccatcataacctttcttc |
82 |
Q |
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|||||||| || |||| |||||| ||||||||||| |||| ||||||||||||||| ||||| |
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| T |
31903930 |
agaacaaacagtataataccacatgaccaaatatccaccttagctccatcataacctctcttc |
31903992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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