View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_11 (Length: 450)
Name: NF14494_low_11
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 33 - 443
Target Start/End: Complemental strand, 238813 - 238403
Alignment:
| Q |
33 |
aaaatacaattatgtgtcatgtgtttaactttattctacgtaccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtttttgactt |
132 |
Q |
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| T |
238813 |
aaaatacaattatgtgtcatgtgtttaactttatgctacgtaccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtttttgactt |
238714 |
T |
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| Q |
133 |
cagcaacaacaacaacaactacacaaaatattagagggtgcagtgcaggnnnnnnnnnnnnnnnaactatattcttccaaactcaaaccttaaaacacgt |
232 |
Q |
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| T |
238713 |
cagcaacaacaacaacaactacacaaaatattagagggtgcagtgcagggagagagaggagagaaactatattcttccaaactcaaaccctaaaacacgt |
238614 |
T |
|
| Q |
233 |
gcatgcagttattattgatgctgatggtgaggagggtccttcacaatcccactctatatatacacacttcctaagagtaagtaattaaaaattacttaga |
332 |
Q |
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| T |
238613 |
gcatgcagttattattgatgctgatggtgaggagggtccttcacaatcccactctatatatacacacttcctaagagtaagtaattaaaaattacttaga |
238514 |
T |
|
| Q |
333 |
aaggatcttcacaataaattatttattgcaaactggctcccatgagaaaatgtacgtacgtcagggtggaatcagcattaatacactttaattaatattt |
432 |
Q |
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| T |
238513 |
aaggatcttcacaataaattatttattgcaaactggctcccatgagaaaatgtaagtacgtcagggtggaatcagcattaatacactttaattaatattt |
238414 |
T |
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| Q |
433 |
ctatattcttc |
443 |
Q |
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| T |
238413 |
ctatattcttc |
238403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 224817 - 224766
Alignment:
| Q |
73 |
taccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtt |
124 |
Q |
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|||| ||||||||||||| ||| ||||||||||||||||| || |||||||| |
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| T |
224817 |
tacctagcatgccaaaggcaaatgccaaagtgttgtgactgattgccatgtt |
224766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 22677432 - 22677376
Alignment:
| Q |
245 |
tattgatgctgatggtgaggagggtccttcacaatcccactctatatatacacactt |
301 |
Q |
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| T |
22677432 |
tattgatggtgatggtgaggagggtccttcacaatcccactctatatatacacactt |
22677376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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