View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_12 (Length: 448)
Name: NF14494_low_12
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 1584704 - 1584282
Alignment:
| Q |
11 |
caaagggccttaacactcaagaccttgtcacccttgttggtaagagatctaaatattttcaaaatttatttaccactttagaattacatattgaagttgc |
110 |
Q |
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| T |
1584704 |
caaaaggccttaacactcaagaccttgtcacccttgttggtaagagatctaaatattttcgaaatttatttatcactctagaattacatattgatgttgc |
1584605 |
T |
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| Q |
111 |
attcacattaattaatattctatgaatatattataggtggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactac |
210 |
Q |
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| T |
1584604 |
at-cacattaattaatattttatgaatatattataggtggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactac |
1584506 |
T |
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| Q |
211 |
aaatggtgcagctgatccttcaatagacccttcatttctttcacaattacaaacactttgtcctcaaaacagtggtgctacaaacagaattgcattggat |
310 |
Q |
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| T |
1584505 |
aaatggtgcagctgatccttcaatagacccttcatttctttcacaattacaaacactttgtcctcaaaacagtggtgctacaaacagaattgcattggat |
1584406 |
T |
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| Q |
311 |
actggaagtcaaaataaatttgataattcttactatgctaatctgaggaacggacgtggaattcttcaatctgatcaagcattgtggaatgatgcttcca |
410 |
Q |
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| T |
1584405 |
actggaagtcaaaataaatttgataattcttactatgctaatctgaggaacggacgtggaattcttcaatctgatcaagcattgtggaatgatgcttcca |
1584306 |
T |
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| Q |
411 |
caaagacatttgtgcaaagatact |
434 |
Q |
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| T |
1584305 |
caaagacatttgtgcaaagatact |
1584282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 48 - 434
Target Start/End: Original strand, 1593216 - 1593601
Alignment:
| Q |
48 |
tggtaagagatctaaatattttcaaaatttatttaccactttagaattacatattgaagttgcattcacattaattaatattctatgaatatattatagg |
147 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
1593216 |
tggtaagagatctaaatattttcaaaatttatttatcactctagaattacatattgatgttgcat-cacattaattaatattttatgaatatattatagg |
1593314 |
T |
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| Q |
148 |
tggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactacaaatggtgcagctgatccttcaatagacccttcattt |
247 |
Q |
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| T |
1593315 |
tggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaactttactacaaatggtgcagctgatccttcaatagacccttcattt |
1593414 |
T |
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| Q |
248 |
ctttcacaattacaaacactttgtcctcaaaacagtggtgctacaaacagaattgcattggatactggaagtcaaaataaatttgataattcttactatg |
347 |
Q |
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| T |
1593415 |
ctttcacaattacaaacactttgtcctcaaaacagtggtgctacaaacagaattgcattggatactggaagtcaaaataaatttgataattcttactatg |
1593514 |
T |
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| Q |
348 |
ctaatctgaggaacggacgtggaattcttcaatctgatcaagcattgtggaatgatgcttccacaaagacatttgtgcaaagatact |
434 |
Q |
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| T |
1593515 |
ctaatctgaggaacggacgtggaattcttcaatctgatcaagcattgtggaatgatgcttccacaaagacatttgtgcaaagatact |
1593601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 1592366 - 1592411
Alignment:
| Q |
9 |
agcaaagggccttaacactcaagaccttgtcacccttgttggtaag |
54 |
Q |
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| T |
1592366 |
agcaaaaggcctcaacactcaagaccttgtcacccttgttggtaag |
1592411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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