View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_13 (Length: 439)
Name: NF14494_low_13
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 222 - 418
Target Start/End: Complemental strand, 27253766 - 27253570
Alignment:
| Q |
222 |
tgatgacttctcttactactactttaaagcttttannnnnnnatgtgatttttgtcctcccaattcttgtttcatgtgattcatgcaaatgtgaaactga |
321 |
Q |
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| T |
27253766 |
tgatgagttctcttactactaccttaaagcttttatttttttatgtgatttttatcctcccaattcttgtttcatgtgattcatgcaaatgtgaaactga |
27253667 |
T |
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| Q |
322 |
acaaacaaaagaaaacagtgnnnnnnntgaagcccttcaatacaaacttggttcaattgcttctgtccttgtttgtggtgctcttggtgtaagcctt |
418 |
Q |
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| T |
27253666 |
acaaaccaaagaaaatagtgaaaaaaatgaagcccttcattacaaacttggttcaattgcatctgtccttgtttgtggtgctcttggtgtaagcctt |
27253570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 27253878 - 27253791
Alignment:
| Q |
102 |
acaaacttttgcaaccctttaaatacaacaatcttagtataaacatttctcatacacactcacaccctcttttctcttcctcaatattcc |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27253878 |
acaaacttttgcaaccctttaaatacaacaatcttagtataaacatttctcat--acactcacaccctcttttctcttcctcaatattcc |
27253791 |
T |
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