View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_18 (Length: 397)
Name: NF14494_low_18
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 34 - 377
Target Start/End: Complemental strand, 24241515 - 24241173
Alignment:
| Q |
34 |
caagtgtgtgcgttatgaaacaaacaagtgtgcccaagtggtagaatcaaaggaaaaataaatctcctcaatgacaatgtaatgcaaccaagagaatgat |
133 |
Q |
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| T |
24241515 |
caagtgtgtgcgttatgaaacaaacaagtgtgcgcaagtggtagaatcaaaggaaaaa-aaatctcctcaatgacaatgtaatgcaaccaagagaatgat |
24241417 |
T |
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| Q |
134 |
tctgattattgnnnnnnnntggaaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcatactcttaacattttcca |
233 |
Q |
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| T |
24241416 |
tctaattattgaaaaaaaatggaaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcacactcttaacattttcca |
24241317 |
T |
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| Q |
234 |
aaaacgcggagatggaggtggcccttcgaaatgtgacaagtatcattctgacgacactccaatggttgcactttttataggatggttcaaacaagaggta |
333 |
Q |
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| T |
24241316 |
aaaacgcggagatggaggtggccttccgaaatgtgacaaatatcattctgacgacactctaatagttgcacttttcataggatggttcaaacaagaggtg |
24241217 |
T |
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| Q |
334 |
ttggggcctcaaccattaccatcagcgccaatggtagaagtgtg |
377 |
Q |
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| T |
24241216 |
ttggggcctcaaccattaccatcagcgccaatggtagaagtgtg |
24241173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 307
Target Start/End: Complemental strand, 29111192 - 29111036
Alignment:
| Q |
154 |
ggaaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcatactcttaacattttccaaaaacgcggagatggaggtg |
253 |
Q |
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| T |
29111192 |
ggaaaaatgtacacaacttatgtatgttcaccatcagtgtccactcacaccaaagcatatctcactcttaatagttttcaaaagggtggagatggaggtg |
29111093 |
T |
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| Q |
254 |
gcccttcgaaatgtgaca---agtatcattctgacgacactccaatggttgcacttt |
307 |
Q |
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| T |
29111092 |
gtccttcagaatgtgacaagcagtatcattctgatgacactcctgttgttgcacttt |
29111036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 29058414 - 29058308
Alignment:
| Q |
220 |
cttaacattttccaaaaacgcggagatggaggtggcccttcgaaatgtgaca---agtatcattctgacgacactccaatggttgcactttttataggat |
316 |
Q |
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| T |
29058414 |
cttaacagttttcaaaaaggtggagatggaggtggcccttcagcatgtgataatcagtatcattctgatgacactccagtcgttgcactttccacaggat |
29058315 |
T |
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| Q |
317 |
ggttcaa |
323 |
Q |
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||||||| |
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| T |
29058314 |
ggttcaa |
29058308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 307
Target Start/End: Original strand, 28956668 - 28956822
Alignment:
| Q |
156 |
aaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcatactcttaacattttccaaaaacgcggagatggaggtggc |
255 |
Q |
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||||||||| ||||||||||||||||||| | || | |||| | ||||||| | |||| |||||||| | ||| ||||| | || |||||||||||| |
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| T |
28956668 |
aaaaatgtacacaacttatgaatgttctccagcagtgtctacttacaccaaggcatatctcactcttaatagttttcaaaatggtggtgatggaggtggc |
28956767 |
T |
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| Q |
256 |
ccttcgaaatgtgaca---agtatcattctgacgacactccaatggttgcacttt |
307 |
Q |
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| T |
28956768 |
ccttcagaatgtgataatcaataccattctgatgacactccagttgttgcacttt |
28956822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 293
Target Start/End: Complemental strand, 29069246 - 29069104
Alignment:
| Q |
154 |
ggaaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcatactcttaacattttccaaaaacgcggagatggaggtg |
253 |
Q |
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||||||||||| ||||| |||| |||||||| |||| | |||| |||||| |||| |||| |||||||| | ||| |||| | ||||||||||||| |
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| T |
29069246 |
ggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatggaggtg |
29069147 |
T |
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| Q |
254 |
gcccttcgaaatgtgaca---agtatcattctgacgacactcc |
293 |
Q |
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| T |
29069146 |
gtccttcagaatgtgacaagcagtatcattccgatgacactcc |
29069104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 293
Target Start/End: Original strand, 11854178 - 11854320
Alignment:
| Q |
154 |
ggaaaaatgtatacaacttatgaatgttctctatcaatatctagtcacaccaaagtttatcatactcttaacattttccaaaaacgcggagatggaggtg |
253 |
Q |
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||||||||||| ||||| |||| |||||||| |||| | |||| |||||| |||| |||| |||||||| | ||| |||| | ||||||||||||| |
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| T |
11854178 |
ggaaaaatgtacacaacatatgtatgttctccatcagtgtctactcacacaaaagcatatctcactcttaatagttttgaaaagggtggagatggaggtg |
11854277 |
T |
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| Q |
254 |
gcccttcgaaatgtgaca---agtatcattctgacgacactcc |
293 |
Q |
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| T |
11854278 |
gtccttcagaatgtgacaagcagtatcattccgatgacactcc |
11854320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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