View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_19 (Length: 386)
Name: NF14494_low_19
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 36 - 368
Target Start/End: Complemental strand, 24627657 - 24627326
Alignment:
| Q |
36 |
gattattctaacttacactgtaacagcatgtccaccaaatgtgtatagtatattggttgctccagtgaagtacaacactaannnnnnnggaccagtatgt |
135 |
Q |
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| T |
24627657 |
gattattctaacttacactgtaacagcatgtccaccaaatgtgtatagtatattggttgctccagtgaagtacaacactaatttttttggaccagtatgt |
24627558 |
T |
|
| Q |
136 |
gtcacattttctgcctgcaacattatttccaaaatcatatctttagaatatcttaataaagatttcaaactttatagtaagattttgaannnnnnnggtt |
235 |
Q |
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| T |
24627557 |
gtcacattttctgcctgcaacattatttccaaaatcatatctttagaatatct-aataaagatttcaaactttatagtaagattttgaatttttttggtt |
24627459 |
T |
|
| Q |
236 |
agttaatttacctggccatgaacgattgatgctatagtaaggtaccaagcagtgtatgtagtcattccaagtccaaggaaggaccaaatacggtaattgt |
335 |
Q |
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| T |
24627458 |
agttaatttacctggccatgaacgattgatgctatagtaaggtaccaagcagtgtatgtagtcattccaagtccaaggaaggaccaaatacggtaattgt |
24627359 |
T |
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| Q |
336 |
ggaaggatggtatgaacacagttgtagcacaac |
368 |
Q |
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| T |
24627358 |
ggaaggatggtatgaacacagttgtagcacaac |
24627326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 368
Target Start/End: Complemental strand, 4533130 - 4533000
Alignment:
| Q |
238 |
ttaatttacctggccatgaacgattgatgctatagtaaggtaccaagcagtgtatgtagtcattccaagtccaaggaaggaccaaatacggtaattgtgg |
337 |
Q |
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| T |
4533130 |
ttaatttacctggccattaactatagcagctatagccatataccaagcagtataagtggtcattccaagaccaagaaatgaccaaatacgataattatgg |
4533031 |
T |
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| Q |
338 |
aaggatggtatgaacacagttgtagcacaac |
368 |
Q |
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| T |
4533030 |
aatgaaggtatgaacacagttgtagcacaac |
4533000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 4534063 - 4533994
Alignment:
| Q |
46 |
acttacactgtaacagcatgtccaccaaatgtgtatagtatattggttgctccagtgaagtacaacacta |
115 |
Q |
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| T |
4534063 |
acttacactgtcacagcatgtccaccgaatgtgtagagtatgttagtggctccagtgaagtacagcacta |
4533994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 368
Target Start/End: Complemental strand, 35322161 - 35322034
Alignment:
| Q |
241 |
atttacctggccatgaacgattgatgctatagtaaggtaccaagcagtgtatgtagtcattccaagtccaaggaaggaccaaatacggtaattgtggaag |
340 |
Q |
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|||||||||||||||||| || | ||| || || | |||||||| |||||||||||||| ||||| |||||||| |||||||| | || || ||||| |
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| T |
35322161 |
atttacctggccatgaacaatggctgcaatggtcatataccaagctgtgtatgtagtcatgccaaggccaaggaaagaccaaattctatagttatggaat |
35322062 |
T |
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| Q |
341 |
gatggtatgaacacagttgtagcacaac |
368 |
Q |
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| T |
35322061 |
gaaggtatgaacactgttgtagcacaac |
35322034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 32803617 - 32803674
Alignment:
| Q |
50 |
acactgtaacagcatgtccaccaaatgtgtatagtatattggttgctccagtgaagta |
107 |
Q |
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| T |
32803617 |
acactgtaacagcatgtccaccaaaggtatagagaatgttggtagctccggtgaagta |
32803674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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