View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_21 (Length: 365)
Name: NF14494_low_21
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 171 - 349
Target Start/End: Complemental strand, 42641107 - 42640929
Alignment:
| Q |
171 |
ctgttgtcaatttcgttgtttgattcaaatcagcatgacatctggagcacaacaagctttgagaaggacaatggagatatattctaattctactcgtttt |
270 |
Q |
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| T |
42641107 |
ctgttgtcaatttcgttgtttgattcaaatcagcatgacatctggagcacaacaagctttgagaaggacaatggagatatattctaattctactcgtttc |
42641008 |
T |
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| Q |
271 |
gcgcttgcttgcaatacatcttctaagattattgagccgattcagagtaggtgtgccattgtgcgattttcgcgattgt |
349 |
Q |
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| T |
42641007 |
gcgcttgcttgcaatacatcttctaagattattgagccgattcagagtaggtgtgccattgtgcgattttcgcgattgt |
42640929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 197 - 349
Target Start/End: Original strand, 42565144 - 42565296
Alignment:
| Q |
197 |
aaatcagcatgacatctggagcacaacaagctttgagaaggacaatggagatatattctaattctactcgttttgcgcttgcttgcaatacatcttctaa |
296 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||||||| |
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| T |
42565144 |
aaataagcatgacatctggagcacaacaagctttgagaaggacaatggagatatattctaattctacccatttcgcgcttgcttccaatacatcttctaa |
42565243 |
T |
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| Q |
297 |
gattattgagccgattcagagtaggtgtgccattgtgcgattttcgcgattgt |
349 |
Q |
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| T |
42565244 |
gattattgagccaattcagagtaggtgtgccattgtgcgattttcacgattgt |
42565296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 42641274 - 42641188
Alignment:
| Q |
4 |
atcaagatgtttgctcaaaagaaagtaacacttcctccaggccgacacaaagttgttatacttgatgaagctgacaggtctgtattg |
90 |
Q |
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| T |
42641274 |
atcaagatgtttgctcaaaagaaagtaacacttcctccaggccgacacaaagttgttatacttgatgaagctgacaggtctgtattg |
42641188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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