View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14494_low_22 (Length: 352)

Name: NF14494_low_22
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14494_low_22
NF14494_low_22
[»] chr5 (10 HSPs)
chr5 (11-219)||(15063189-15063397)
chr5 (168-219)||(5048083-5048134)
chr5 (169-219)||(5046541-5046591)
chr5 (169-219)||(5047312-5047362)
chr5 (224-311)||(5663817-5663905)
chr5 (21-81)||(5047449-5047509)
chr5 (11-51)||(5664629-5664669)
chr5 (21-81)||(5046678-5046738)
chr5 (11-45)||(5663021-5663055)
chr5 (220-277)||(5046425-5046482)
[»] chr4 (12 HSPs)
chr4 (11-213)||(28787099-28787301)
chr4 (18-219)||(24853431-24853629)
chr4 (11-79)||(6824842-6824910)
chr4 (224-307)||(28787906-28787990)
chr4 (108-219)||(51246707-51246818)
chr4 (169-218)||(17525452-17525501)
chr4 (109-219)||(24856322-24856432)
chr4 (220-277)||(51246599-51246656)
chr4 (222-277)||(17525557-17525612)
chr4 (226-304)||(24853295-24853374)
chr4 (230-279)||(24856212-24856261)
chr4 (220-307)||(28786956-28787042)
[»] chr2 (1 HSPs)
chr2 (138-219)||(20978765-20978846)
[»] chr1 (4 HSPs)
chr1 (11-209)||(22056355-22056550)
chr1 (220-333)||(22056604-22056718)
chr1 (220-311)||(22055529-22055621)
chr1 (227-279)||(29374155-29374207)
[»] scaffold0406 (2 HSPs)
scaffold0406 (116-219)||(6365-6468)
scaffold0406 (220-262)||(6272-6314)
[»] chr3 (4 HSPs)
chr3 (221-277)||(12739319-12739375)
chr3 (220-277)||(12738168-12738225)
chr3 (169-214)||(12738289-12738334)
chr3 (220-277)||(15023036-15023093)
[»] chr7 (2 HSPs)
chr7 (220-333)||(22622439-22622553)
chr7 (113-220)||(22622282-22622389)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 9e-98; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 15063397 - 15063189
Alignment:
Q  11 agaatatatagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttgga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15063397 agaatatatagttggtgacaagaggtcatattttgctacgcccaattaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttgga 15063298  T
Q  111 gctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatat 210  Q
    ||| |||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15063297 gctggtggtagagtggttagtagtatcggactagaggacgcacattagtgatgagcatattgtaggaggtgagaatatgatatggtgaagccttcaatat 15063198  T
Q  211 tattgacat 219  Q
    |||||||||    
T  15063197 tattgacat 15063189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 5048134 - 5048083
Alignment:
Q  168 tattgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 219  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5048134 tattgtaggaggagagaatatgatatggtgaagcctctaatattattgacat 5048083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 5046591 - 5046541
Alignment:
Q  169 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 219  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5046591 attgtaggaggagagaatatgatatggtgaagcctctaatattattgacat 5046541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 5047362 - 5047312
Alignment:
Q  169 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 219  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5047362 attgtaggaggagagaatatgatatggtgaagcctctaatattattgacat 5047312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 5663817 - 5663905
Alignment:
Q  224 ttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaattta 311  Q
    ||||||||||||||| | |||||| | ||||||| |||| ||||| ||||||||||  ||||||||| || ||||||||||||||||||    
T  5663817 ttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctacaattta 5663905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 5047509 - 5047449
Alignment:
Q  21 gttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatac 81  Q
    |||| ||||| || |||||||||||||| ||| |||||||||||||| |||||||||||||    
T  5047509 gttgatgacacgaagtcatattttgctatgcctagttaatgaccgaatgcagctctgatac 5047449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 5664629 - 5664669
Alignment:
Q  11 agaatatatagttggtgacaagaggtcatattttgctacgc 51  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  5664629 agaatatatagttggtgacacgaggtcatattttgctacgc 5664669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 5046738 - 5046678
Alignment:
Q  21 gttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatac 81  Q
    |||| ||||| || |||||||||||||| ||| ||||||||| |||| |||||||||||||    
T  5046738 gttgatgacacgaagtcatattttgctatgcctagttaatgatcgaatgcagctctgatac 5046678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 5663021 - 5663055
Alignment:
Q  11 agaatatatagttggtgacaagaggtcatattttg 45  Q
    |||||||||||||||||||| ||||||||||||||    
T  5663021 agaatatatagttggtgacacgaggtcatattttg 5663055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 5046482 - 5046425
Alignment:
Q  220 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 277  Q
    ||||||| ||||||||||| | |||||||||||||||| |||| || |||| ||||||    
T  5046482 gtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctaca 5046425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 28787301 - 28787099
Alignment:
Q  11 agaatatatagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttgga 110  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||||| |||||||| ||||||||| | ||| | |||| |||||||||   |||    
T  28787301 agaatatatagttggtgacacgagatcatattttgttacgcccagttaatgatcgaacgcatctctgataccactgttgaaaaaatatagtgta---gga 28787205  T
Q  111 gctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgata---tggtgaagcctttaa 207  Q
    |||| ||||||||| ||||||||||| | || ||||||| ||||||||  || | |  ||| ||||||| || |||||||||   |||||||||||| ||    
T  28787204 gctaatggtagagtggttagtagcattgaacaagaggacacacattagtaattacctcattataggaggagataatatgatatggtggtgaagccttcaa 28787105  T
Q  208 tattat 213  Q
    ||||||    
T  28787104 tattat 28787099  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 24853629 - 24853431
Alignment:
Q  18 atagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttggagctagtg 117  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||| ||  |||||||| | |||   |||| ||||||||||   |||||||||    
T  24853629 atagttggtgacatgaggttatattttgcgacgcctagttaatgatcgaacacaaatctgataccaatgttagaaaaatatagtgtag---gagctagtg 24853533  T
Q  118 gtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattgac 217  Q
    || ||||  |||||||||| |||| ||||||| || ||| |  || |||  |||||||||||  ||||||||||||| ||||||||| ||||||||||||    
T  24853532 gtggagtgtttagtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaatatgatatgatgaagccttcaatattattgac 24853433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 6824842 - 6824910
Alignment:
Q  11 agaatatatagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgat 79  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  6824842 agaatatatagttggtgacacaaggtcatattttgctacgccctgttaatgactgaacgcagccctgat 6824910  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 28787990 - 28787906
Alignment:
Q  224 ttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaa 307  Q
    ||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||  || |||||| |||||||||||||||||    
T  28787990 ttgaagatgtttctagaactagaataatctaggcctttgttttccttttgtacattagataattatagatatttctaggctacaa 28787906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 51246818 - 51246707
Alignment:
Q  108 ggagctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaa 207  Q
    |||||||||| | ||||  ||||||| || |||| ||||||| ||||||||  || |||  ||||||||||| ||||||||||| |||||||||||| ||    
T  51246818 ggagctagtgctggagtgtttagtagtatgggacaagaggacacacattaggaattagctcattgtaggaggagagaatatgatttggtgaagccttcaa 51246719  T
Q  208 tattattgacat 219  Q
    ||||||||||||    
T  51246718 tattattgacat 51246707  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 17525452 - 17525501
Alignment:
Q  169 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgaca 218  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  17525452 attgtaggaggagagaatatgatatggtgaagccttcaatattattgaca 17525501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 24856432 - 24856322
Alignment:
Q  109 gagctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaat 208  Q
    ||||||||||| ||||  |||||||||| |||| ||| ||| || ||| |  || |||  ||||||||||| ||||||||||||||||||| | || |||    
T  24856432 gagctagtggtggagtgtttagtagcattggacaagatgacacatattggtaattagctcattgtaggaggagagaatatgatatggtgaaactttcaat 24856333  T
Q  209 attattgacat 219  Q
    |||||||||||    
T  24856332 attattgacat 24856322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 51246656 - 51246599
Alignment:
Q  220 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 277  Q
    ||||||| ||||||||||||| |||||||||||||||| |||| || |||| ||||||    
T  51246656 gtgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctaca 51246599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 17525557 - 17525612
Alignment:
Q  222 gcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 277  Q
    ||||| ||||||||||||| |||||||||||||||| |||| || |||| ||||||    
T  17525557 gcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctaca 17525612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 24853374 - 24853295
Alignment:
Q  226 gaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggcta 304  Q
    |||||||||| |||| |||||||||| ||||| |||| || |||||||||||||  ||||||||| || ||||| |||||    
T  24853374 gaagatgtttttagaactagaataatttaggcctttgtttgccttttctacattagattattatagatgtttcttggcta 24853295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 24856261 - 24856212
Alignment:
Q  230 atgtttctagagctagaataatctaggcttttggtttccttttctacatt 279  Q
    ||||||||||| |||||||||||||||| |||| || ||||| |||||||    
T  24856261 atgtttctagaactagaataatctaggcctttgtttgcctttcctacatt 24856212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 28787042 - 28786956
Alignment:
Q  220 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacat-tcattattatatatatttctaggctacaa 307  Q
    ||||||||||||||||||||| ||  |||||| ||||| ||||  ||||||||||||||   || |||||| || ||||||||||||||    
T  28787042 gtgcttgaagatgtttctagaact--aataatttaggcctttgtattccttttctacataagataattatagatgtttctaggctacaa 28786956  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 20978765 - 20978846
Alignment:
Q  138 ggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 219  Q
    |||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  20978765 ggacaagaggacacacattagtgataagcatattgtaggaggagagaatatgatatggtgaagccttcaatattattgacat 20978846  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 22056355 - 22056550
Alignment:
Q  11 agaatatatagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttgga 110  Q
    ||||||||||||||||||||   |||  |||||||||| | ||| | |||| | ||||| ||||||||||| ||||| | |||| |||||||||   |||    
T  22056355 agaatatatagttggtgacacatggttgtattttgctatgtccactgaatggcggaacgaagctctgataccattgttggaaaaatatagtgta---gga 22056451  T
Q  111 gctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaata 209  Q
    || | ||||||| ||||||||||||| |||| ||||||| || ||| |  || | |  |||||| |||| |||||||| ||||||||||||||| ||||    
T  22056452 gccaatggtagatttgttagtagcattggacaagaggacacatatttgtaattaactcattgtatgaggagagaatataatatggtgaagccttcaata 22056550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 22056604 - 22056718
Alignment:
Q  220 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaatttactgaagg 318  Q
    |||||||||||| |||||||| |||||||||||||||| |||| || |||||||||||||  ||||| ||| || ||| |||||||||| ||| |  ||     
T  22056604 gtgcttgaagatatttctagaactagaataatctaggcatttgtttgccttttctacattagattatcatagatgtttttaggctacaaattaatctaga 22056703  T
Q  319 tattaacagaacaat 333  Q
     ||||||||||||||    
T  22056704 cattaacagaacaat 22056718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 22055529 - 22055621
Alignment:
Q  220 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaattta 311  Q
    ||||||||||||| ||||||| ||| |||||||||||  |||| || |||||| ||||||  ||||||||| || ||||||||||||||||||    
T  22055529 gtgcttgaagatgattctagaactaaaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaattta 22055621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 29374207 - 29374155
Alignment:
Q  227 aagatgtttctagagctagaataatctaggcttttggtttccttttctacatt 279  Q
    |||||| | ||||||||| ||| || |||||||||| ||||||||||||||||    
T  29374207 aagatgatgctagagctataatgatttaggcttttgttttccttttctacatt 29374155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 6468 - 6365
Alignment:
Q  116 tggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattg 215  Q
    ||||||||| ||||||||||| |||| ||| ||| ||||||||  || |||  ||| ||||||| || |||||||| | |||||||||| ||||||||||    
T  6468 tggtagagtggttagtagcattggacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattattg 6369  T
Q  216 acat 219  Q
    ||||    
T  6368 acat 6365  T

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Target: scaffold0406; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 6314 - 6272
Alignment:
Q  220 gtgcttgaagatgtttctagagctagaataatctaggcttttg 262  Q
    |||||||||| |||||||||| |||||||||||||||| ||||    
T  6314 gtgcttgaagctgtttctagaactagaataatctaggcctttg 6272  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 12739375 - 12739319
Alignment:
Q  221 tgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 277  Q
    |||||| ||||||||||||| ||| ||||||||||||||||| || |||||||||||    
T  12739375 tgcttgtagatgtttctagaactaaaataatctaggcttttgtttgccttttctaca 12739319  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 12738225 - 12738168
Alignment:
Q  220 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 277  Q
    ||||||| ||||||||||||| ||| ||| ||||||||||||| || |||||||||||    
T  12738225 gtgcttgtagatgtttctagaactaaaattatctaggcttttgtttgccttttctaca 12738168  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 12738334 - 12738289
Alignment:
Q  169 attgtaggaggtgagaatatgatatggtgaagcctttaatattatt 214  Q
    ||||||||||  ||||||||||| |||||||||||| |||||||||    
T  12738334 attgtaggagaagagaatatgatttggtgaagccttcaatattatt 12738289  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 15023093 - 15023036
Alignment:
Q  220 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 277  Q
    ||||||| ||||||||||||| ||| |||||||||||| |||| || |||| ||||||    
T  15023093 gtgcttgtagatgtttctagaactaaaataatctaggcatttgtttgccttatctaca 15023036  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 22622439 - 22622553
Alignment:
Q  220 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaatttactgaagg 318  Q
    |||| ||||||||||||||||  ||||||||||||||  |||| || |||||||||||||  | |||| || || ||| |||||||||||||| |  ||     
T  22622439 gtgcctgaagatgtttctagaattagaataatctaggtctttgtttgccttttctacattagaatattgtagatgtttttaggctacaatttaatctaga 22622538  T
Q  319 tattaacagaacaat 333  Q
    |||||| ||||||||    
T  22622539 tattaatagaacaat 22622553  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 22622282 - 22622389
Alignment:
Q  113 tagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatatta 212  Q
    |||||||||||||||||||||||| |||| ||||||| || |||    || |||  ||| |||||||  ||||||||| ||||| | ||||  |||||||    
T  22622282 tagtggtagagttgttagtagcattggacaagaggacacatattgtaaattagctcattctaggaggaaagaatatgaaatggtaatgcctacaatatta 22622381  T
Q  213 ttgacatg 220  Q
    ||||||||    
T  22622382 ttgacatg 22622389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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