View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14494_low_33 (Length: 248)

Name: NF14494_low_33
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14494_low_33
NF14494_low_33
[»] chr3 (3 HSPs)
chr3 (118-230)||(34224049-34224161)
chr3 (79-124)||(34224486-34224531)
chr3 (20-69)||(36627269-36627318)
[»] chr1 (3 HSPs)
chr1 (20-125)||(40778733-40778837)
chr1 (20-82)||(49619519-49619581)
chr1 (118-158)||(40779044-40779084)
[»] chr8 (2 HSPs)
chr8 (20-125)||(16497171-16497275)
chr8 (118-158)||(16497493-16497533)
[»] scaffold0034 (1 HSPs)
scaffold0034 (20-65)||(98399-98444)
[»] scaffold0171 (1 HSPs)
scaffold0171 (20-69)||(28961-29010)
[»] chr7 (2 HSPs)
chr7 (38-82)||(29657375-29657419)
chr7 (20-69)||(7147589-7147638)
[»] chr5 (1 HSPs)
chr5 (38-83)||(14357570-14357615)
[»] scaffold2117 (1 HSPs)
scaffold2117 (20-68)||(232-280)
[»] chr2 (1 HSPs)
chr2 (25-56)||(12364468-12364499)
[»] chr4 (1 HSPs)
chr4 (20-69)||(37642246-37642295)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 34224161 - 34224049
Alignment:
Q  118 cagtagcagtgctcttgaagtagagacattgttctggaaagctacggttgataaaccgttttctgttgagtatgctaatgatatgccgggttctgctttt 217  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34224161 cagtaacagtgctcttgaaatagagacattgttctggaaagctacggtggataaaccgttttctgttgagtatgctaatgatatgccgggttctgctttc 34224062  T
Q  218 gcgtacacggtgg 230  Q
    ||| |||||||||    
T  34224061 gcggacacggtgg 34224049  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 34224531 - 34224486
Alignment:
Q  79 aatcaaacggcgacgtattcccatgattaaaatccttgccagtagc 124  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  34224531 aatcaaacggcgacgtattcccatggttaaaatccatgccagtagc 34224486  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 36627269 - 36627318
Alignment:
Q  20 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaactttc 69  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  36627269 tcatccaaaattggatcaccaaaagccattaactccaaaaagaaactttc 36627318  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 40778733 - 40778837
Alignment:
Q  20 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaactttctatcactaaaatcaaacggcgacgtattcccatgattaaaatccttgcca 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| || ||||||||||| ||||||||| |||||    
T  40778733 tcattcaaaatcggatcaccaaaacccattaactccaaaaag-aactatctatcaccaaaatcaaacggtgatgtattcccatggttaaaatccatgcca 40778831  T
Q  120 gtagca 125  Q
    ||||||    
T  40778832 gtagca 40778837  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 49619581 - 49619519
Alignment:
Q  20 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaactttctatcactaaaatc 82  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  49619581 tcattcaaaatcagatcaccaaaacccattaactccaaaacgaaactttctttcaccaaaatc 49619519  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 40779044 - 40779084
Alignment:
Q  118 cagtagcagtgctcttgaagtagagacattgttctggaaag 158  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  40779044 cagtaacagtgctcttgaaatagagacattgttctggaaag 40779084  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 16497171 - 16497275
Alignment:
Q  20 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaactttctatcactaaaatcaaacggcgacgtattcccatgattaaaatccttgcca 119  Q
    |||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||| || ||||||||||| ||||||||| |||||    
T  16497171 tcattcaaaatcggatcatcaaaacccatcaactccaaaaagaa-ctttctatcaccaaaatcaaacggtgatgtattcccatggttaaaatccatgcca 16497269  T
Q  120 gtagca 125  Q
    ||||||    
T  16497270 gtagca 16497275  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 16497493 - 16497533
Alignment:
Q  118 cagtagcagtgctcttgaagtagagacattgttctggaaag 158  Q
    ||||| || |||||||||| |||||||||||||||||||||    
T  16497493 cagtaacaatgctcttgaaatagagacattgttctggaaag 16497533  T

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Target: scaffold0034 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 98399 - 98444
Alignment:
Q  20 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaac 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  98399 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaac 98444  T

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Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 29010 - 28961
Alignment:
Q  20 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaactttc 69  Q
    |||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  29010 tcatccaaaattggatcaccaaaacccattcactccaaaaagaaactttc 28961  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 29657375 - 29657419
Alignment:
Q  38 ccaaaacccattaactccaaaaagaaactttctatcactaaaatc 82  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||    
T  29657375 ccaaaactcattaactccaaaaagaaactttctatcaccaaaatc 29657419  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 7147638 - 7147589
Alignment:
Q  20 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaactttc 69  Q
    |||| |||||| |||||||  |||||||||||||||||||||||||||||    
T  7147638 tcatccaaaattggatcactgaaacccattaactccaaaaagaaactttc 7147589  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 14357615 - 14357570
Alignment:
Q  38 ccaaaacccattaactccaaaaagaaactttctatcactaaaatca 83  Q
    ||||||| ||||||||||||||||||||||| |||||| |||||||    
T  14357615 ccaaaactcattaactccaaaaagaaactttttatcaccaaaatca 14357570  T

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Target: scaffold2117 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold2117
Description:

Target: scaffold2117; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 280 - 232
Alignment:
Q  20 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaacttt 68  Q
    |||| |||||| ||||||||||||| |||| ||||||||||||||||||    
T  280 tcatccaaaattggatcaccaaaactcattcactccaaaaagaaacttt 232  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 12364468 - 12364499
Alignment:
Q  25 caaaatcggatcaccaaaacccattaactcca 56  Q
    ||||||||||||||||||||||||||||||||    
T  12364468 caaaatcggatcaccaaaacccattaactcca 12364499  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 37642295 - 37642246
Alignment:
Q  20 tcattcaaaatcggatcaccaaaacccattaactccaaaaagaaactttc 69  Q
    ||||||||||| |||||| ||| ||||||| ||||||||| |||||||||    
T  37642295 tcattcaaaattggatcatcaacacccattcactccaaaatgaaactttc 37642246  T

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