View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_38 (Length: 229)
Name: NF14494_low_38
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 46645133 - 46645248
Alignment:
| Q |
12 |
agaagcaaagggtttgtgtagtgatgttaacctttgagtttgagaaggaaacgttgaatc----ggttgaatgctaagtaaggttttgtttacaaagagt |
107 |
Q |
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| T |
46645133 |
agaagtaaagggtttgtgtagtgatgttaacctttgagtttgagaaagaaacgttgaatcggttggttgaatgctaagtaaggttttgttttcaaagagt |
46645232 |
T |
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| Q |
108 |
tgaagaccaagtatac |
123 |
Q |
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| T |
46645233 |
tgaagaccaagtatac |
46645248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 46616216 - 46616136
Alignment:
| Q |
24 |
tttgtgtagtgatgttaacctttgagtttgagaaggaaacgttgaatcggttgaatgctaagtaaggttttgtttacaaag |
104 |
Q |
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| T |
46616216 |
tttgtgttgtgtttttaacctttgaatttgagcaagaaacgctggttcggttgaatgctaagtaaggttttgttttcaaag |
46616136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 46645303 - 46645335
Alignment:
| Q |
178 |
tatatttggagatgattgtgcaagaaaaaacgt |
210 |
Q |
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| T |
46645303 |
tatatttggagatgattgtgcaagaaaagacgt |
46645335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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