View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_39 (Length: 227)
Name: NF14494_low_39
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 43883405 - 43883598
Alignment:
| Q |
16 |
actaatcttgattgttcgaactcaaatcaatgatgaagattatttgaagatatgttggtgaaggtgtgtaatgtatgtcaaccgatctcaaatcgattgt |
115 |
Q |
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| T |
43883405 |
actaatcttgattgttcgaactcaaatcaatgatgaagattatttgaagatatgttggtgaaggtgtgtaatgtatgtcagccgatctcaaatcgattgt |
43883504 |
T |
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| Q |
116 |
cgagatcaattaatgtgtataactgtgtcttttttacttgcactgaatccagattcatgtaaatataataaagtcattggtatgttggaacttct |
210 |
Q |
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| T |
43883505 |
cgagatcaattaatgtgtataactgtgtcttttttac-tgcactgaatccagattcatgtaaatataataaagtcattggtatgttggaacttct |
43883598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 13408263 - 13408311
Alignment:
| Q |
81 |
gtgtaatgtatgtcaaccgatctcaaatcgattgtcgagatcaattaat |
129 |
Q |
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| T |
13408263 |
gtgtaatgtttgtcaaccgatttcaaatctatgatcgagatcaattaat |
13408311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 12581749 - 12581792
Alignment:
| Q |
100 |
atctcaaatcgattgtcgagatcaattaatgtgtataactgtgt |
143 |
Q |
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| T |
12581749 |
atctcaaatcaattgtcgagatcaattaatatgtataaatgtgt |
12581792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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