View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14494_low_44 (Length: 205)
Name: NF14494_low_44
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 22516181 - 22516366
Alignment:
| Q |
1 |
attcaattcaccttccatcaaagtgatgaaagctcatatagctaaaccttgagattgtgcaacagacacaaataatgtacaacacttcaaatatgcagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22516181 |
attcaattcaccttccatcaaagtgatgaaagctcatatagctaaaccttgagattgtgcaacagacacaaattatgtacaacacttcaaatatgcagca |
22516280 |
T |
|
| Q |
101 |
ctgactcccnnnnnnntctattaacacatccccgtataaattaaaaaagaaatgattaacatcgttgatatttatattgaatctac |
186 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22516281 |
ctgactcccaaaaaaatctattaacacatccccgtataaattaaaaaagaaatgattaacatcgttgatatttatattgaatctac |
22516366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University