View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_7 (Length: 556)
Name: NF14494_low_7
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 86 - 543
Target Start/End: Complemental strand, 35508155 - 35507699
Alignment:
| Q |
86 |
agtctattgcatacttctgcaaatttcgctcgaagttcttctgtaagatgatcttctatagttatgatcactggatattgagatgcaacaaaaccatatt |
185 |
Q |
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| T |
35508155 |
agtctattgcatacttctgcaaatttcgctcgaagttcttctgtaagatgatcttctatagttatgatcactggatattgagatgcaacaaaaccatatt |
35508056 |
T |
|
| Q |
186 |
tctttatagactccaaacatttgataggtgatacaggatttgtaagtgtcctatgacagtgacaaaaatgaaataagttttgtgttgatttgattaagat |
285 |
Q |
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| T |
35508055 |
tctttatagactccaaacatttgataggtgatacaggatttgtaagtgtcctatgacagtgacaaaaatgaaataagttttgtgttgattcgattaagat |
35507956 |
T |
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| Q |
286 |
catataaaacaaccgattttattgtttatatagtctaaatagtaccatccatgatcaactttaatatcttctttactagaagttggccataaatcgagtt |
385 |
Q |
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| T |
35507955 |
catataaaa-aaccgattttattgtttatatagtctaaatagtaccatccatgatcaactttaatatcttctttactagaagttggccataaatcgagtt |
35507857 |
T |
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| Q |
386 |
ctataacacgcacgccttgttgcagcgcctttatgattggttcttcactgcaatcactgcttagttgatttccagtaaggaaggaattgtgtcctgtata |
485 |
Q |
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| T |
35507856 |
ctataacacgcacgccttgttgcagcgcctttatgattggttcttcactgcaatcactgcttagttgatttccagtaaggaaggaattgtgtcctgtata |
35507757 |
T |
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| Q |
486 |
tatgaaataatgtgacaatggagcactcatatcatgatttacctgtaatgacatttat |
543 |
Q |
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| T |
35507756 |
tatgaaataatgtgacaatggagcactcatatcatgatttacctgtaatgacatttat |
35507699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 368 - 530
Target Start/End: Complemental strand, 35521298 - 35521136
Alignment:
| Q |
368 |
ttggccataaatcgagttctataacacgcacgccttgttgcagcgcctttatgattggttcttcactgcaatcactgcttagttgatttccagtaaggaa |
467 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| | |||||||||||||||||||| ||||| ||||| || | |
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| T |
35521298 |
ttggccataaatcgagttctataacgcgcacgcctcgttgcaacgcctttatgattggtacatcactgcaatcactgcttagctgattgccagttagata |
35521199 |
T |
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| Q |
468 |
ggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctg |
530 |
Q |
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| T |
35521198 |
ggaattgtgtcctgtgtatatgaaataatgtgataacggggcattcatgtcatggtgtacctg |
35521136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 523
Target Start/End: Complemental strand, 30080309 - 30080216
Alignment:
| Q |
430 |
tcactgcaatcactgcttagttgatttccagtaaggaaggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgat |
523 |
Q |
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| T |
30080309 |
tcactacaatcactgctgagttgatttccagtgagataagagttatggccagtatatataaaataatgcgacaatggagctgtcatatcctgat |
30080216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 355 - 536
Target Start/End: Complemental strand, 31652102 - 31651921
Alignment:
| Q |
355 |
tctttactagaagttggccataaatcgagttctataacacgcacgccttgttgcagcgcctttatgattggttcttcactgcaatcactgcttagttgat |
454 |
Q |
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|||||| | |||| |||||||||||| ||||| || || || || ||||||| || |||| ||| ||||||| ||||||| |||||| | | ||||| |
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| T |
31652102 |
tctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaatgcctctataattggtttatcactgctctcactggtaaattgat |
31652003 |
T |
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| Q |
455 |
ttccagtaaggaaggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctgtaatga |
536 |
Q |
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| T |
31652002 |
ttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaaaggagctttcatatcatgatgtacctgcaatga |
31651921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 355 - 536
Target Start/End: Complemental strand, 31702331 - 31702150
Alignment:
| Q |
355 |
tctttactagaagttggccataaatcgagttctataacacgcacgccttgttgcagcgcctttatgattggttcttcactgcaatcactgcttagttgat |
454 |
Q |
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|||||| | |||| |||||||||||| ||||| || || || || ||||||| || |||| ||| ||||||| ||||||| ||||| | | ||||| |
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| T |
31702331 |
tctttagttgaagatggccataaatcaagttcaattactcgtacaccttgtttcaaagcctctataattggtttatcactgctctcactagtaaattgat |
31702232 |
T |
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| Q |
455 |
ttccagtaaggaaggaattgtgtcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctgtaatga |
536 |
Q |
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| T |
31702231 |
ttccagtaaggtaggaattgtgtcctgtatacatgaaataatgtgacaaaggagcttccatatcatgatgtacctgcaatga |
31702150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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