View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14494_low_9 (Length: 475)
Name: NF14494_low_9
Description: NF14494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14494_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 5126698 - 5126249
Alignment:
| Q |
18 |
acattgtcctctttggtacggttttgctggtggtcgtctgaaactgctgcagagactggcttatataaacaccattgtttaccctttcacatcccttcct |
117 |
Q |
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| T |
5126698 |
acattgtcctctttggtacggttttgctggcggtcgtctgaaactgctgcagagactggcttatataaacaccatcgtttaccctttcacatcccttcct |
5126599 |
T |
|
| Q |
118 |
ctcgttgcttattgtactttgcctgcaatttgcctactcacaggaaaattcatcataccaacggtaattttctcatctttattttggtctaacataaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5126598 |
ctcgttgcttattgtactttgcctgcaatttgcctactcacaggaaaattcatcataccaacggtaattttctcatctttattttggtctaagataaaag |
5126499 |
T |
|
| Q |
218 |
atctatgaatttcagtagaaatagtgttcgaaagtgtgttgttatcctctattatcaagtcaataaaagaccatgtgttagaaatatagtttcctatagt |
317 |
Q |
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| T |
5126498 |
atctacgaatttcagtagaaatagtgttcgaaagtgtgttgttatcctctattatcaagtcaataaaagaccatgtgttagaaatatagtttcctatagt |
5126399 |
T |
|
| Q |
318 |
atcttccaataactaatnnnnnnnntaagaaaatgtaacattatataatataaagtcataatgattctaagttcttacatcaaattgttgtggctaattt |
417 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5126398 |
atcttccaataactaat-aaaaaaataagaaaatgtaacattatataatataaagtcataatgattctaagttcttacatcaaattgttgtggctaattt |
5126300 |
T |
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| Q |
418 |
gatgcagctatcaaacattgcaagtgcactctttcttggacttttcatctc |
468 |
Q |
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| T |
5126299 |
gatgcagctatcaaacattgcaagtgcactctttcttggacttttcatctc |
5126249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 63 - 185
Target Start/End: Complemental strand, 35924580 - 35924458
Alignment:
| Q |
63 |
gctgcagagactggcttatataaacaccattgtttaccctttcacatcccttcctctcgttgcttattgtactttgcctgcaatttgcctactcacagga |
162 |
Q |
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|||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
35924580 |
gctgcagagattggcttatataaacactattgtttatccttttacatcccttcctctagttgcttattgtactttgccagcaatttgccttctcacagga |
35924481 |
T |
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| Q |
163 |
aaattcatcataccaacggtaat |
185 |
Q |
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| T |
35924480 |
aaatttatcataccaacggtaat |
35924458 |
T |
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