View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14495_high_2 (Length: 628)
Name: NF14495_high_2
Description: NF14495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14495_high_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 581; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 4 - 612
Target Start/End: Original strand, 37202133 - 37202741
Alignment:
| Q |
4 |
ctataatcttacacttccaaccaaattcaatgcgtaatttttcaagtgctgcatgagttaggaaacagtgacttcaaatcaaaatagttacaatgcatta |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37202133 |
ctataatcttacacttccaaccaaattcaatgcgtaatttttcaagtgctgcatgagttaggaaacagtgacttcaaatcaaaatagttacaatgcatta |
37202232 |
T |
|
| Q |
104 |
agtgagtcctaaaaccactaccatgaagaaaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactt |
203 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37202233 |
agcgagtcctaaaaccactaccatgaagaaaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactt |
37202332 |
T |
|
| Q |
204 |
tagatttcgcatacccaactgttatagatatcgcggtagactcatccttcgctctagccaatctctctttgcaagcagtttcttcagcacatattgcttc |
303 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37202333 |
tagatttggcatacccaactgttatagatatcgcggtagactcatccttcgctctagccaatctctctttgcaagcagtttcttcagcacatattgcttc |
37202432 |
T |
|
| Q |
304 |
caacatttcggacacttttttcttttgtgcttcacatttttctaatgcattctcagactcttcaatgagcttcctattactctctgttttctctttcagc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37202433 |
caacatttcggacacttttttcttttgtgcttcacatttttccaatgcattctcagactcttcaatgagcttcctattactctctgttttctctttcagc |
37202532 |
T |
|
| Q |
404 |
actgcagatttcttaagaatatcccttgcctcacgtacctcaattagcctcatgtgaagccaatccacctccactttcatatcttttattccaccaacaa |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37202533 |
actgcagatttcttaagaatatcccttgcctcacgtacctcaattagcctcatgtgaagccaatccacctccactttcatatcttttattccaccaacaa |
37202632 |
T |
|
| Q |
504 |
gacgaatcctgtcttccaagacacattcattgatattgctaagattgttgtcttcgaactcggatatgattccacaaattatctccaaaaacgctcaacg |
603 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
37202633 |
aacgaatcctgtcttccaagacacatccattgatattgctaagattgttgtcttcgaactcggatatgattccacaaattatctccaacaacgctgaacg |
37202732 |
T |
|
| Q |
604 |
gcctttcac |
612 |
Q |
| |
|
||||||||| |
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|
| T |
37202733 |
gcctttcac |
37202741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 157 - 483
Target Start/End: Original strand, 37183215 - 37183541
Alignment:
| Q |
157 |
ctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttcgcatacccaactgttatagatatcgcggtagactcatccttcgct |
256 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| | || |||||| ||||||||| |
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|
| T |
37183215 |
ctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgct |
37183314 |
T |
|
| Q |
257 |
ctagccaatctctctttgcaagcagtttcttcagcacatattgcttccaacatttcggacacttttttcttttgtgcttcacatttttctaatgcattct |
356 |
Q |
| |
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| |||||||||| |||||||||||| |||| | |||||||| || |||| | || || ||| ||||| | | ||||||||| || ||| || | | |
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|
| T |
37183315 |
atggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctgatgcttccttcttctcttcttcacattctttcaattcacttt |
37183414 |
T |
|
| Q |
357 |
cagactcttcaatgagcttcctattactctctgttttctctttcagcactgcagatttcttaagaatatcccttgcctcacgtacctcaattagcctcat |
456 |
Q |
| |
|
|| ||||||||||||||||| ||| |||||||||||||| |||| || | ||||| | ||| |||||||| ||| || |||||| |||||| | |
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|
| T |
37183415 |
caacgtcttcaatgagcttcctgttatcgtctgttttctcttttagcataacaaacttcttcataatctcccttgcgtcaagtgcctcaactagccttgt |
37183514 |
T |
|
| Q |
457 |
gtgaagccaatccacctccactttcat |
483 |
Q |
| |
|
| ||||||| || |||||||||||||| |
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|
| T |
37183515 |
gcgaagccattcaacctccactttcat |
37183541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 157 - 483
Target Start/End: Original strand, 37194347 - 37194673
Alignment:
| Q |
157 |
ctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttcgcatacccaactgttatagatatcgcggtagactcatccttcgct |
256 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| | || |||||| ||||||||| |
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|
| T |
37194347 |
ctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgct |
37194446 |
T |
|
| Q |
257 |
ctagccaatctctctttgcaagcagtttcttcagcacatattgcttccaacatttcggacacttttttcttttgtgcttcacatttttctaatgcattct |
356 |
Q |
| |
|
| |||||||||| |||||||||||| |||| | |||||||| || |||| | || || ||| ||||| | | ||||||||| || ||| || | | |
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|
| T |
37194447 |
atggccaatctctgtttgcaagcagtctctttatcacatatttctctcaacctctctgatgcttccttcttctcttcttcacattctttcaattcacttt |
37194546 |
T |
|
| Q |
357 |
cagactcttcaatgagcttcctattactctctgttttctctttcagcactgcagatttcttaagaatatcccttgcctcacgtacctcaattagcctcat |
456 |
Q |
| |
|
|| ||||||||||||||||| ||| |||||||||||||| |||| || | ||||| | ||| |||||||| ||| || |||||| |||||| | |
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|
| T |
37194547 |
caacgtcttcaatgagcttcctgttatcgtctgttttctcttttagcataacaaacttcttcataatctcccttgcgtcaagtgcctcaactagccttgt |
37194646 |
T |
|
| Q |
457 |
gtgaagccaatccacctccactttcat |
483 |
Q |
| |
|
| ||||||| || |||||||||||||| |
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|
| T |
37194647 |
gcgaagccattcaacctccactttcat |
37194673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 133 - 306
Target Start/End: Original strand, 37180125 - 37180298
Alignment:
| Q |
133 |
aaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttcgcatacccaactgttatagat |
232 |
Q |
| |
|
||||| ||| ||||||||||| | |||||| |||||||| | |||||||| ||||||||||| | ||||||||| | ||||| ||||||| |||| |
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|
| T |
37180125 |
aaacaggaatatgaaattgcaacactaaattaaaccatccatcactgagcgtttcagaaagcgactgactttagatgtgcaataccgaactgtttgagat |
37180224 |
T |
|
| Q |
233 |
atcgcggtagactcatccttcgctctagccaatctctctttgcaagcagtttcttcagcacatattgcttccaa |
306 |
Q |
| |
|
|| | ||||||||||| ||| ||| | |||||| |||||||||||||| |||| | |||||||| ||||||| |
|
|
| T |
37180225 |
attgaggtagactcattctttgctgcggtcaatctttctttgcaagcagtctctttaacacatatttcttccaa |
37180298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 37172821 - 37172935
Alignment:
| Q |
13 |
tacacttccaaccaaattcaatgcgtaatttttcaagtgctgcatgagttaggaaac-agtgacttcaaatcaaaatagt--tacaatgcattaagtgag |
109 |
Q |
| |
|
||||| ||||||||||||||||| || ||| | ||||| ||||||||||| |||||| |||| ||| ||||||||||||| || ||| ||||||| | |
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|
| T |
37172821 |
tacacctccaaccaaattcaatgtgtcattgtgcaagtcctgcatgagttgggaaacaagtgtcttaaaatcaaaatagtcataaaat-cattaagcaaa |
37172919 |
T |
|
| Q |
110 |
tcctaaaaccactacc |
125 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37172920 |
tcctaaaaccactacc |
37172935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 492
Target Start/End: Original strand, 37211914 - 37211993
Alignment:
| Q |
413 |
ttcttaagaatatcccttgcctcacgtacctcaattagcctcatgtgaagccaatccacctccactttcatatcttttat |
492 |
Q |
| |
|
||||||||||| | |||||||||| ||| |||| ||||||| |||||||||| || || |||||||||| || |||||| |
|
|
| T |
37211914 |
ttcttaagaatctgccttgcctcaagtatctcagttagcctggtgtgaagccactcaacttccactttcagattttttat |
37211993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 5365769 - 5365596
Alignment:
| Q |
133 |
aaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttcgcatacccaactgttatagat |
232 |
Q |
| |
|
||||| ||| ||||||||||| | |||||| |||||||| | |||||||| ||||| ||||| | |||||||| | ||||| ||||| |||| |
|
|
| T |
5365769 |
aaacaggaatatgaaattgcaacactaaattaaaccatccatcactgagcgtttcaaaaagcgtctggctttagatgtgtaataccggtctgtttgagat |
5365670 |
T |
|
| Q |
233 |
atcgcggtagactcatccttcgctctagccaatctctctttgcaagcagtttcttcagcacatattgcttccaa |
306 |
Q |
| |
|
|||| |||||| |||| ||| ||| || |||||| |||||||||||||| |||| | |||||||| ||||||| |
|
|
| T |
5365669 |
atcgaggtagattcattctttgctgcagtcaatctttctttgcaagcagtctctttaacacatatttcttccaa |
5365596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 5365955 - 5366039
Alignment:
| Q |
110 |
tcctaaaaccactaccatgaagaaaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagc |
194 |
Q |
| |
|
||||||||| || |||||||| |||||| || |||||| |||| | |||||| |||||||| | |||||||| ||||||||||| |
|
|
| T |
5365955 |
tcctaaaacaaccaccatgaataaaacagaaatatgaaactgcaacactaaattaaaccatccatcactgagcgtttcagaaagc |
5366039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 20450565 - 20450626
Alignment:
| Q |
133 |
aaacatgaagatgaaattgcatcgctaaatcaaaccatcaaccactgagcatttcagaaagc |
194 |
Q |
| |
|
||||| ||| ||||||||||| | |||||| |||||||| | |||||||| ||||||||||| |
|
|
| T |
20450565 |
aaacaagaatatgaaattgcaacactaaattaaaccatccatcactgagcgtttcagaaagc |
20450626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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