View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14495_high_3 (Length: 581)
Name: NF14495_high_3
Description: NF14495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14495_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 200 - 563
Target Start/End: Original strand, 42759628 - 42759991
Alignment:
| Q |
200 |
gaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759628 |
gaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacag |
42759727 |
T |
|
| Q |
300 |
tcaggcatgtatatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacagatggatagatgtgttggttttcaaa |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759728 |
tcaggcatgtatatatatacagagggaataaagtgcatgattgtgttaatatgcatgggaaaaagaggattacagatggatagatgtgttggttttcaaa |
42759827 |
T |
|
| Q |
400 |
acgaaagttcaatagccattaattaatgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacata |
499 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759828 |
acgaaagttcaataacccttaactaatgttgtgctctattcaagcaaggggaatttcgaaatacaaatacaaactaaatgaaaaactaaaggtttacata |
42759927 |
T |
|
| Q |
500 |
aaacacggtaaactaagcagaccacaataattgcattattttgaattcaaacagccaaatactt |
563 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759928 |
aaacaaggtaaactaagcagaccacaataattgcattattttgaattcaaacagccaaatactt |
42759991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 42759433 - 42759531
Alignment:
| Q |
1 |
cagagaaatacttagggaaaaatataaatggaattgaaatgaaattggatacttatattaaacagaaatagtctggaacaaaatagatttggcaaactt |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42759433 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaactagatacttaaattaaacagaaatagtcttgaacaaaatagatttggcaaactt |
42759531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 212 - 563
Target Start/End: Complemental strand, 1402208 - 1401857
Alignment:
| Q |
212 |
aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacagtcaggcatgtat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |
|
|
| T |
1402208 |
aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaacggaaacagtcaggcatgtgt |
1402109 |
T |
|
| Q |
312 |
atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacagatggatagatgtgttggttttcaaaacgaaagttcaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402108 |
atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttggttttcaaaacgaaagttcaa |
1402009 |
T |
|
| Q |
412 |
tagccattaattaatgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacataaaacacggtaaa |
511 |
Q |
| |
|
||||| || |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1402008 |
tagcccttgattaatgttgtgttgtattcaagcaaggggaattttgaaatacaaatacaaactaaatggaaaactaaaggtttacataaaacacggtaaa |
1401909 |
T |
|
| Q |
512 |
ctaagcagaccacaataattgcattattttgaattcaaacagccaaatactt |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1401908 |
ctaagcagaccacaataattgcattattttgaattcaaacagtcaaatactt |
1401857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 1402400 - 1402306
Alignment:
| Q |
1 |
cagagaaatacttagggaaaaatataaatggaattgaaatgaaattggatacttatattaaacagaaatagtctggaacaaaatagatttggcaaa |
96 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
1402400 |
cagagaattacttagggcaaaatataaatggaattgaaatgaaactggatactta-attaaacagatatagtcttgaacaaaatagatttggcaaa |
1402306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University