View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14495_high_5 (Length: 479)
Name: NF14495_high_5
Description: NF14495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14495_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 463
Target Start/End: Original strand, 32479144 - 32479603
Alignment:
| Q |
14 |
atatcatcatttaataaaatgtgaaagcatttgaatatttgaggatgttttcattccagcattagtattc-taattccatcattgtttccatggcttcta |
112 |
Q |
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| T |
32479144 |
atatcatcatttaataaaatgtgaaagcatttgaatatttgaggatgttttcattccagcattagtattgataattccatcattgtttccatggcttcta |
32479243 |
T |
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| Q |
113 |
tgagtgaattaatattaagtgataggcagtaacatgcgtgttgacttgtttgctcacttgagtaaacctcaagatcaatttacaaagcgatgttttattt |
212 |
Q |
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| T |
32479244 |
tgagtgaattaatattaagtgataagcagtaacatgcgagttgacttgtttgctcacttgagtaaaccttaagatcaatttacaaagcgatgttttattt |
32479343 |
T |
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| Q |
213 |
tttcatgaccatatgctgatcttctataacatcactg---------nnnnnnnnnnattacaaattctataatatcactgttaatctttcaattatcatc |
303 |
Q |
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| T |
32479344 |
tttcatgaccatatgctgatcttctataacatcactgtttttttgttttttttttttttacaaattctataatatcactgttaatctttcaattatcatc |
32479443 |
T |
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| Q |
304 |
gaattacatagatgggaaatattcaataatattttgtttcttaaagatttacaagctacatgtccaaccgattgcatacaggaaagcacacttttgattt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32479444 |
gaattacatagatgggaaatattcaataatattttgtttcttaaagatttacaagctacatgtccaaccgattgcatacaggaaagcacaattttgattt |
32479543 |
T |
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| Q |
404 |
ttgaatgtgcagaagggcatccttttagatgagcaaaaatccccttcagagttcagtttc |
463 |
Q |
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| T |
32479544 |
ttgaatgtgcagaagggcatccttttagatgagcaaaaatccccttcagagttcagtttc |
32479603 |
T |
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