View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14495_high_9 (Length: 259)
Name: NF14495_high_9
Description: NF14495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14495_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 10877449 - 10877675
Alignment:
| Q |
10 |
tacagctgatcccaaatctccttcgaaaatttcttgcatcagtgaaaagtgaaaagccttgcaacctcggataaacaa-tggaaccactaattacctaat |
108 |
Q |
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| T |
10877449 |
tacagctgatcacaaatctccttcgaaaatttcttgtatcaatgaaaag-------ccttgcaacctcggataaataactggaatcactgattacctaat |
10877541 |
T |
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| Q |
109 |
aatctaaagcatcgataatcaagcaaacatcaattatagattctacatcactaatt-gtactatgagatttaagccaacaaccctttaagtcattgttat |
207 |
Q |
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| T |
10877542 |
aatctaaagcattgataatcaagcaaacatcaattatagattctacaccaccaatttgtactatgagatttaagccaacagccctttaagtcattgttat |
10877641 |
T |
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| Q |
208 |
gggacaaccctaaaagaattgagatatctaggtg |
241 |
Q |
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| T |
10877642 |
gtgacaaccctaaaagaattgagatatccaggtg |
10877675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 13950051 - 13949996
Alignment:
| Q |
88 |
tggaaccactaattacctaataatctaaagcatcgataatcaagcaaacatcaatt |
143 |
Q |
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| T |
13950051 |
tggaaccactaattgcctgataatataaaacatcgataatcaagcaaacctcaatt |
13949996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 1159188 - 1159304
Alignment:
| Q |
10 |
tacagctgatcccaaatctccttcgaaaatttcttgcatcagtgaaaagtgaaaagccttgcaacctcggataaacaatggaaccactaattacctaata |
109 |
Q |
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| T |
1159188 |
tacagctgatcccagatctccttcgaaaatttcttgcatcagtgaaaagtgaaaagccttgcaacctccgataaacaatggaaccactaattacctaata |
1159287 |
T |
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| Q |
110 |
atctaaagcatcgataa |
126 |
Q |
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| T |
1159288 |
gtctaaagcatcgataa |
1159304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 1159305 - 1159343
Alignment:
| Q |
203 |
gttatgggacaaccctaaaagaattgagatatctaggtg |
241 |
Q |
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| T |
1159305 |
gttatgggacaaccctaaaagaattgagatatctaggtg |
1159343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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