View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14495_low_4 (Length: 570)

Name: NF14495_low_4
Description: NF14495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14495_low_4
NF14495_low_4
[»] chr6 (4 HSPs)
chr6 (369-552)||(6845718-6845912)
chr6 (75-245)||(6845929-6846098)
chr6 (247-294)||(6860203-6860250)
chr6 (247-294)||(14618734-14618781)
[»] chr5 (4 HSPs)
chr5 (247-295)||(27405305-27405353)
chr5 (247-295)||(25213860-25213908)
chr5 (247-295)||(25278010-25278058)
chr5 (251-292)||(31185993-31186034)
[»] scaffold0263 (1 HSPs)
scaffold0263 (247-294)||(23001-23048)
[»] chr7 (3 HSPs)
chr7 (247-294)||(35130636-35130683)
chr7 (253-294)||(7737408-7737449)
chr7 (253-292)||(36647489-36647528)
[»] chr3 (5 HSPs)
chr3 (247-294)||(27825693-27825740)
chr3 (249-294)||(33785882-33785927)
chr3 (249-294)||(35610921-35610966)
chr3 (247-287)||(39091336-39091376)
chr3 (247-287)||(19439561-19439601)
[»] chr8 (1 HSPs)
chr8 (247-294)||(26174357-26174404)
[»] chr4 (2 HSPs)
chr4 (253-294)||(27510483-27510524)
chr4 (250-294)||(13436434-13436478)
[»] chr2 (2 HSPs)
chr2 (251-292)||(36316286-36316327)
chr2 (247-287)||(12015166-12015206)
[»] chr1 (2 HSPs)
chr1 (253-295)||(41418182-41418224)
chr1 (146-186)||(24123793-24123833)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 8e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 369 - 552
Target Start/End: Complemental strand, 6845912 - 6845718
Alignment:
Q  369 tcatgtgaggaagttaacaatgaaggtaaagggcaaggtagagtta-atataaaggaggaagatt-attattgagagggagaa-tgttgtaacgtgttgg 465  Q
    |||||||||||||||||||| |||||||||||| || ||| || || |||||||||||||||||| |||||||||||  | || ||| |||| |||||||    
T  6845912 tcatgtgaggaagttaacaacgaaggtaaaggggaatgtaaagctatatataaaggaggaagatttattattgagagaaaaaaatgtggtaaggtgttgg 6845813  T
Q  466 tttggaagaaggttatactgtttcaatgtg--------tggctatgtgtatatggagttgatgaagagatagatgacttattttatagctataat 552  Q
    ||||||||||||||||||||||||||||||        || |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||    
T  6845812 tttggaagaaggttatactgtttcaatgtgtgactaattgactatgtgtctatggagtagatgaagaggtagatgacttattttatagctataat 6845718  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 75 - 245
Target Start/End: Complemental strand, 6846098 - 6845929
Alignment:
Q  75 aggtgaacaaaaacctaagatatttgtgtttttctcgcctctttagatagggtttg-gtgttatccttgcgcaagggttatgttaatcttttttatattg 173  Q
    |||||||  ||| |||||||||| |||||||||||  |||  | ||||||| |||  |||| ||||||||||| ||||  |||||||||| ||||||| |    
T  6846098 aggtgaatgaaatcctaagatatgtgtgtttttctaacct--taagataggttttttgtgtgatccttgcgcaggggtcctgttaatcttctttatatcg 6846001  T
Q  174 ttccaattttatcggaagtcaccgaatgaacaaggtaggtttttggtggactaggctttggtgctactgata 245  Q
    |||||||||||||||||||| || || ||||||  ||||||||||||||| ||||||||||||||| |||||    
T  6846000 ttccaattttatcggaagtctccaaaggaacaaattaggtttttggtggattaggctttggtgctattgata 6845929  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 6860203 - 6860250
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttttctaaca 294  Q
    ||||||||||||||||||||||||| || |||||||||||| ||||||    
T  6860203 tatttgagttttctctcattccttccttggatatcatgtttactaaca 6860250  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 14618781 - 14618734
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttttctaaca 294  Q
    |||||||||||||| |||||||||| || |||||||||||| ||||||    
T  14618781 tatttgagttttctttcattccttccttggatatcatgtttactaaca 14618734  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 27405353 - 27405305
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttttctaacaa 295  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||    
T  27405353 tatttgagttttctctcattccttcattggatatcatgtttcctaacaa 27405305  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 25213860 - 25213908
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttttctaacaa 295  Q
    ||||| |||||||||||||||| ||||| |||||||||||| |||||||    
T  25213860 tatttaagttttctctcattccctcattggatatcatgtttcctaacaa 25213908  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 25278010 - 25278058
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttttctaacaa 295  Q
    ||||| |||||||||||||||| ||||| |||||||||||| |||||||    
T  25278010 tatttaagttttctctcattccctcattggatatcatgtttcctaacaa 25278058  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 31186034 - 31185993
Alignment:
Q  251 tgagttttctctcattccttcattagatatcatgttttctaa 292  Q
    ||||||||||||||||||||| || |||||||||||| ||||    
T  31186034 tgagttttctctcattccttcgttggatatcatgtttcctaa 31185993  T

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Target: scaffold0263 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 23001 - 23048
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttttctaaca 294  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  23001 tatttgagttttctctcattccttcattggatatcatgtttcctaaca 23048  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 35130636 - 35130683
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttttctaaca 294  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  35130636 tatttgagttttctctcattccttcattggatatcatgtttcctaaca 35130683  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 7737408 - 7737449
Alignment:
Q  253 agttttctctcattccttcattagatatcatgttttctaaca 294  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  7737408 agttttctctcattccttcattggatatcatgtttcctaaca 7737449  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 36647528 - 36647489
Alignment:
Q  253 agttttctctcattccttcattagatatcatgttttctaa 292  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  36647528 agttttctctcattctttcattggatatcatgttttctaa 36647489  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 27825740 - 27825693
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttttctaaca 294  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  27825740 tatttgagttttctctcattccttcattggatatcatgtttcctaaca 27825693  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 33785882 - 33785927
Alignment:
Q  249 tttgagttttctctcattccttcattagatatcatgttttctaaca 294  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||    
T  33785882 tttgagttttctctcattccttcattggatatcatgtttcctaaca 33785927  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 35610921 - 35610966
Alignment:
Q  249 tttgagttttctctcattccttcattagatatcatgttttctaaca 294  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||    
T  35610921 tttgagttttctctcattccttcattggatatcatgtttcctaaca 35610966  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 39091376 - 39091336
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttt 287  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  39091376 tatttgagttttctctcattccttcattggatatcatgttt 39091336  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 19439561 - 19439601
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttt 287  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  19439561 tatttgagttttctctcattccttccttggatatcatgttt 19439601  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 26174357 - 26174404
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttttctaaca 294  Q
    ||||||||||||||||||||||||| || |||||||||||| ||||||    
T  26174357 tatttgagttttctctcattccttccttggatatcatgtttactaaca 26174404  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 27510524 - 27510483
Alignment:
Q  253 agttttctctcattccttcattagatatcatgttttctaaca 294  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  27510524 agttttctctcattccttcattggatatcatgtttcctaaca 27510483  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 13436478 - 13436434
Alignment:
Q  250 ttgagttttctctcattccttcattagatatcatgttttctaaca 294  Q
    |||||||||||||||||||||  ||| ||||||||||| ||||||    
T  13436478 ttgagttttctctcattcctttcttaaatatcatgtttcctaaca 13436434  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 36316327 - 36316286
Alignment:
Q  251 tgagttttctctcattccttcattagatatcatgttttctaa 292  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  36316327 tgagttttctctcattccttcattggatatcatgtttcctaa 36316286  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 12015166 - 12015206
Alignment:
Q  247 tatttgagttttctctcattccttcattagatatcatgttt 287  Q
    ||||||||||||||||||||| ||| || ||||||||||||    
T  12015166 tatttgagttttctctcattctttccttggatatcatgttt 12015206  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 41418182 - 41418224
Alignment:
Q  253 agttttctctcattccttcattagatatcatgttttctaacaa 295  Q
    |||||||||| ||||||||||| |||||||||||| |||||||    
T  41418182 agttttctctaattccttcattggatatcatgtttcctaacaa 41418224  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 24123793 - 24123833
Alignment:
Q  146 aagggttatgttaatcttttttatattgttccaattttatc 186  Q
    |||||| ||||||||||| | ||||||||||||||||||||    
T  24123793 aagggtcatgttaatcttctatatattgttccaattttatc 24123833  T

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